GgaINT0105030 @ galGal3
Intron Retention
Description
NA
Coordinates
chr1:79480954-79481841:-
Coord C1 exon
chr1:79481671-79481841
Coord A exon
chr1:79481087-79481670
Coord C2 exon
chr1:79480954-79481086
Length
584 bp
Sequences
Splice sites
5' ss Seq
AGGGTATGT
5' ss Score
8.34
3' ss Seq
ATTAATTCTTTTACATGCAGGAG
3' ss Score
6.76
Exon sequences
Seq C1 exon
GTGTACTACCGGCTTCATTTGAGTGATTTGTATGGCTATTATTACAATGGACTCAACCTGCAAGATGACCCACCAGAGGAGTGTACCCCAGTCAAAACCACTTTTTTTGATGGCTTGTACTATGAACCTGTCAATGTCAGCCATGATGGTGATGTCTACAGGATTTTCAGG
Seq A exon
GTATGTGTTCTGTTTGTTTTTTCAAATGTTCCAGAAGAATTCATGCACATTAGCATTAAACTTTCTAAGGTGATGGTTTTGATCCCTTGAACTCCCTTTACTCTTCAGTCATCCAATTTCTGCCTTCTGACATCCACCTCTTAGTCAGGAAGACTGAGAATCACTACTTGATGTGTTCATTGGAATCCAGTCCATAATTCAGTAGATGATTCTTAAGCAGGACCATGAACTTTGTTCATGACCTCAGGCATTCCTAGTAAAGATCTGAGTATATTATGCAGACCACTGCTTTCCTGATACATTTTTCTCCACTCTCACTCATCCTATATCTCTGTGACTTTCTCTGTCTTGTTGCAAAAGACCTAACATGAGCACCACCAGTGCTGCCTGTGACAGAACAACAGTTGTCACTACCTAGAAAGACCTGCATGCAGCAGAAGAATAACTTGTGACATTCAGAGTTGAAAGGCTGGAATGTGAGAAGTGAGGAGAGAGATGAGTGATGTTAACCCAGATGAGAGATGTGGCATGCATTGGTAGCTACTGCATGCACCAAATGACATGATTAATTCTTTTACATGCAG
Seq C2 exon
GAGATGGGCCTGAAGGTTTTCACCAACTCTACGCTACGGAAGCCAGTTTTGTGCAATGAAGACAAGTTGGATTGGGAAGAAAACCGTATCTATTTTGAACATGGTGCCAGTGGTGGTAGTGCCTTTGGCAAAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSGALG00000011930:ENSGALT00000019460:15
Average complexity
IR
Mappability confidence:
NA
Protein Impact
ORF disruption upon sequence inclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=NA C2=0.000
Domain overlap (PFAM):
C1:
NO
A:
NA
C2:
NO
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Other assemblies
Conservation
Human
(hg38)
No conservation detected
Zebrafish
(danRer10)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
ACTACCGGCTTCATTTGAGTGA
R:
CAAAGGCACTACCACCACTGG
Band lengths:
294-878
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]