GgaINT0105030 @ galGal4
Intron Retention
Description
Uncharacterized protein [Source:UniProtKB/TrEMBL;Acc:F1NEW8]
Coordinates
chr1:75838596-75839483:-
Coord C1 exon
chr1:75839313-75839483
Coord A exon
chr1:75838729-75839312
Coord C2 exon
chr1:75838596-75838728
Length
584 bp
Sequences
Splice sites
5' ss Seq
AGGGTATGT
5' ss Score
8.34
3' ss Seq
ATTAATTCTTTTACATGCAGGAG
3' ss Score
6.76
Exon sequences
Seq C1 exon
GTGTACTACCGGCTTCATTTGAGTGATTTGTATGGCTATTATTACAATGGACTCAACCTGCAAGATGACCCACCAGAGGAGTGTACCCCAGTCAAAACCACTTTTTTTGATGGCTTGTACTATGAACCTGTCAATGTCAGCCATGATGGTGATGTCTACAGGATTTTCAGG
Seq A exon
GTATGTGTTCTGTTTGTTTTTTCAAATGTTCCAGAAGAATTCATGCACATTAGCATTAAACTTTCTAAGGTGATGGTTTTGATCCCTTGAACTCCCTTTACTCTTCAGTCATCCAATTTCTGCCTTCTGACATCCACCTCTTAGTCAGGAAGACTGAGAATCACTACTTGATGTGTTCATTGGAATCCAGTCCATAATTCAGTAGATGATTCTTAAGCAGGACCATGAACTTTGTTCATGACCTCAGGCATTCCTAGTAAAGATCTGAGTATATTATGCAGACCACTGCTTTCCTGATACATTTTTCTCCACTCTCACTCATCCTATATCTCTGTGACTTTCTCTGTCTTGTTGCAAAAGACCTAACATGAGCACCACCAGTGCTGCCTGTGACAGAACAACAGTTGTCACTACCTAGAAAGACCTGCATGCAGCAGAAGAATAACTTGTGACATTCAGAGTTGAAAGGCTGGAATGTGAGAAGTGAGGAGAGAGATGAGTGATGTTAACCCAGATGAGAGATGTGGCATGCATTGGTAGCTACTGCATGCACCAAATGACATGATTAATTCTTTTACATGCAG
Seq C2 exon
GAGATGGGCCTGAAGGTTTTCACCAACTCTACGCTACGGAAGCCAGTTTTGTGCAATGAAGACAAGTTGGATTGGGAAGAAAACCGTATCTATTTTGAACATGGTGCCAGTGGTGGTAGTGCCTTTGGCAAAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSGALG00000011930:ENSGALT00000019460:16
Average complexity
IR
Mappability confidence:
NA
Protein Impact
ORF disruption upon sequence inclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=NA C2=0.000
Domain overlap (PFAM):
C1:
NO
A:
NA
C2:
NO
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Other assemblies
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
ACTACCGGCTTCATTTGAGTGA
R:
CAAAGGCACTACCACCACTGG
Band lengths:
294-878
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]