DreINT0000080 @ danRer10
Intron Retention
Gene
ENSDARG00000041685 | A2ML1 (3 of 13)
Description
alpha-2-macroglobulin-like 1 [Source:HGNC Symbol;Acc:HGNC:23336]
Coordinates
chr15:21297725-21298109:-
Coord C1 exon
chr15:21297984-21298109
Coord A exon
chr15:21297813-21297983
Coord C2 exon
chr15:21297725-21297812
Length
171 bp
Sequences
Splice sites
5' ss Seq
AAGGTAACA
5' ss Score
8.92
3' ss Seq
ATTTAATTTTGTTTTCACAGAGA
3' ss Score
7.73
Exon sequences
Seq C1 exon
ATCTTCAACCTGCTGCCAGTTCAGTCGGTGTCATATTATCCATACAGTGTTGAAGATGAGCAGCCGTGTCTACATGTGAGACCCCGTCGATCTGTGCTAACAGACAACGTCTATGAAAACTTAAAG
Seq A exon
GTAACAGGTCGAATCCATGTGTGACAGTACAGATTAGAATCCTAGATTTGGTTTGGGTGAGTGAATACCAAACATACTTTAAGCGCACAAAAAGCCCTCTTGATATTTCAGACGTGATTATTCTGTATTTCAATTCAATTTGACAGATTTTATTTAATTTTGTTTTCACAG
Seq C2 exon
AGAGTGGGGCTGAAAATGGCTTCAAATTTGTTTGTGCGAGTCCCTGAGTGTCTGTCATACAGAGGCCTGACTTATCACAGAAAAATAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSDARG00000041685:ENSDART00000155787:15
Average complexity
IR
Mappability confidence:
NA
Protein Impact
ORF disruption upon sequence inclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=NA C2=0.000
Domain overlap (PFAM):
C1:
NO
A:
NA
C2:
NO
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Associated events
Conservation
Human
(hg38)
No conservation detected
Human
(hg19)
No conservation detected
Chicken
(galGal3)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
TCTTCAACCTGCTGCCAGTTC
R:
TTTTTCTGTGATAAGTCAGGCCTCT
Band lengths:
210-381
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]