RnoEX0001111 @ rn6
Exon Skipping
Gene
ENSRNOG00000007247 | A2ml1
Description
alpha-2-macroglobulin-like 1 [Source:RGD Symbol;Acc:1565709]
Coordinates
chr4:161885614-161887953:-
Coord C1 exon
chr4:161887783-161887953
Coord A exon
chr4:161886927-161887086
Coord C2 exon
chr4:161885614-161885716
Length
160 bp
Sequences
Splice sites
3' ss Seq
TTTGTGTCTTCCTCTGAAAGAAT
3' ss Score
5.32
5' ss Seq
CCTGTGGGT
5' ss Score
1.37
Exon sequences
Seq C1 exon
GTGTACAACATGCTCCCGTACGTCCATCAATATGGCTATTTCTACAATGGTCTCAACTTGGATGATGAGAGAGCTGACCCATGCATCCCTCAGAAGGACTTGTTCCACAATGGGCTGTATTATAAACCTACAAGCAATGTTTGGGATGGAGACCTCTCTAATCTTGTCAGG
Seq A exon
AATATGGCTCTGAAAATCTTTACAAATATCCGTTACCGGAAACCGGAAGTGTGTTCATCCCAGGAAAACCAGCCTTTGCTGAGGACATTCAATGACCCAAATGAACGGATAATGATGTACGGTGGTGGTGGTGGTGGTGGCGCACCAGCTGCTTCTGCCT
Seq C2 exon
TTCATGACGCTCCTGACAGCATCAGCCATGCAAAAGTGGCCATCAAAGAGACAGTCAGGACAAACTTCCCCAAGACCTGGCTGTGGAACCTCATCAGCGTGGA
VastDB Features
Vast-tools module Information
Secondary ID
ENSRNOG00000007247_CASSETTE2
Average complexity
S
Mappability confidence:
100%=100=100%
Protein Impact
ORF disruption upon sequence exclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=0.130 C2=0.000
Domain overlap (PFAM):
C1:
NO
A:
NO
C2:
PF0020717=A2M=PU(9.9=25.7)
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Mouse
(mm9)
No conservation detected
Chicken
(galGal4)
No conservation detected
Chicken
(galGal3)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
TGCTCCCGTACGTCCATCAAT
R:
CTGATGAGGTTCCACAGCCAG
Band lengths:
258-418
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]