DreEX6076141 @ danRer10
Exon Skipping
Gene
ENSDARG00000041685 | A2ML1 (3 of 13)
Description
alpha-2-macroglobulin-like 1 [Source:HGNC Symbol;Acc:HGNC:23336]
Coordinates
chr15:21296119-21298109:-
Coord C1 exon
chr15:21297984-21298109
Coord A exon
chr15:21297725-21297812
Coord C2 exon
chr15:21296119-21296260
Length
88 bp
Sequences
Splice sites
3' ss Seq
ATTTAATTTTGTTTTCACAGAGA
3' ss Score
7.73
5' ss Seq
TAGGTACCT
5' ss Score
4.67
Exon sequences
Seq C1 exon
ATCTTCAACCTGCTGCCAGTTCAGTCGGTGTCATATTATCCATACAGTGTTGAAGATGAGCAGCCGTGTCTACATGTGAGACCCCGTCGATCTGTGCTAACAGACAACGTCTATGAAAACTTAAAG
Seq A exon
AGAGTGGGGCTGAAAATGGCTTCAAATTTGTTTGTGCGAGTCCCTGAGTGTCTGTCATACAGAGGCCTGACTTATCACAGAAAAATAG
Seq C2 exon
CGAGGACTGGTGTTGTGAACACTGCTCGATCGAGAATGGGGTTTTCAAGACCAGAATCTTCTCTTGTAAATCGAGATTCTCCCACAGTGACGATTCGGACCGTCTTCCCAGAAACATGGATCTGGGACCTTGCTGAAGTGGG
VastDB Features
Vast-tools module Information
Secondary ID
ENSDARG00000041685-'15-16,'15-15,16-16=AN
Average complexity
A_S
Mappability confidence:
100%=100=100%
Protein Impact
ORF disruption upon sequence exclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=0.000 C2=0.000
Domain overlap (PFAM):
C1:
NO
A:
NO
C2:
PF0020717=A2M=PU(10.0=18.8)
Main Skipping Isoform:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Human
(hg38)
No conservation detected
Human
(hg19)
No conservation detected
Mouse
(mm9)
No conservation detected
Chicken
(galGal4)
No conservation detected
Chicken
(galGal3)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
GCCGTGTCTACATGTGAGACC
R:
TTCTGGGAAGACGGTCCGAAT
Band lengths:
177-265
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]