BtaEX6024053 @ bosTau6
Exon Skipping
Gene
ENSBTAG00000005243 | OVOS2
Description
Bos taurus ovostatin 2 (OVOS2), mRNA. [Source:RefSeq mRNA;Acc:NM_001164024]
Coordinates
chr5:101159870-101164036:+
Coord C1 exon
chr5:101159870-101160040
Coord A exon
chr5:101161721-101161865
Coord C2 exon
chr5:101163940-101164036
Length
145 bp
Sequences
Splice sites
3' ss Seq
TGCTATTTATTTCTTTGAAGGAT
3' ss Score
8.05
5' ss Seq
CATGTAGGT
5' ss Score
4.94
Exon sequences
Seq C1 exon
GTGTACAATATGCTCCCAAATACAGAACTGTATGGTTATTTCTATCGTGGTCTCAACCTTGATGATGGCAAGCTAGACCCTTGCATTCCTCAGAAAGATATGTTTTACAATGGCTTGTATTATATACCTGTAAGCAACCATGGGGATGGAGACATCTATGATATTGTCAAG
Seq A exon
GATATGGGTCTGAAAGTCTTCACCAATCTTCATTACCGGAAACCAGAAGTATGTTCAACAGAGACAAGCATGCCATACCGCGGGCCGCTCTATCTAGAATCGGGAGGATATGCACCCATGTACAGTGCCCCATTGAAAATTGCAT
Seq C2 exon
TCACAAGGGAGAATTTTGACTCCATAGAACGGGTTATAATTGAAACAGTAAGAACAAACTTTCCAGAAACATGGATTTGGGACCTGGTCAGCATTGA
VastDB Features
Vast-tools module Information
Secondary ID
ENSBTAG00000005243-'14-16,'14-14,15-16=AN
Average complexity
A_C3
Mappability confidence:
100%=100=100%
Protein Impact
ORF disruption upon sequence exclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=0.000 C2=0.000
Domain overlap (PFAM):
C1:
NO
A:
NO
C2:
PF0020717=A2M=PU(9.9=27.3)
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Chicken
(galGal4)
No conservation detected
Chicken
(galGal3)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
TGCTCCCAAATACAGAACTGT
R:
CAATGCTGACCAGGTCCCAAA
Band lengths:
257-402
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]