MmuEX1002605 @ mm10
Exon Skipping
Gene
ENSMUSG00000047228 | A2ml1
Description
alpha-2-macroglobulin like 1 [Source:MGI Symbol;Acc:MGI:3039594]
Coordinates
chr6:128558994-128561643:-
Coord C1 exon
chr6:128561473-128561643
Coord A exon
chr6:128560616-128560763
Coord C2 exon
chr6:128558994-128559096
Length
148 bp
Sequences
Splice sites
3' ss Seq
TTTGTGTCTTTCTCTGAAAGAAC
3' ss Score
5.74
5' ss Seq
CCTGTGGGT
5' ss Score
1.37
Exon sequences
Seq C1 exon
GTGTACTTCACACTCCCGTATATCCATCAATATGGCTATTTCTACAATGGCCTCAACTTGGATGATCAGCAAGCAGAACCATGCATTCCTCAGAAGGACTTATTCTACAATGGACTGTATTATACACCTACAGGCAATATTTGGGATGGAGACCTCTCTAATCTTCTCAGT
Seq A exon
AACATGGGTCTGAAAATCTTTACAAATCTCCATTACCGGAAACCGGAAGTGTGTTCATCCCAGGAAAACCAGCCCTTGCTGAGGACGTTCGATCACCCAAATGAACGGATAATGATGTACGGTGGTGGCGCCCCACCTTCTTCTGCCT
Seq C2 exon
TTCATGACTCTGTGGACAGCATCAGCCATGCAAAAGTGGCCATCAAAGAGACAGTGAGGACAAACTTCCCCAGGACATGGATATGGAACCTTGTCAGTGTAGA
VastDB Features
Vast-tools module Information
Secondary ID
ENSMUSG00000047228-'30-25,'30-23,33-25
Average complexity
S
Mappability confidence:
100%=100=100%
Protein Impact
ORF disruption upon sequence exclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=0.020 C2=0.000
Domain overlap (PFAM):
C1:
NO
A:
NO
C2:
PF0020717=A2M=PU(9.9=25.7)
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Chicken
(galGal4)
No conservation detected
Chicken
(galGal3)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
ACTTCACACTCCCGTATATCCA
R:
TGTCCTGGGGAAGTTTGTCCT
Band lengths:
244-392
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Ribosome-engaged transcriptomes of neuronal types
- Neural differentiation time course
- Muscular differentiation time course
- Spermatogenesis cell types
- Reprogramming of fibroblasts to iPSCs
- Hematopoietic precursors and cell types