HsaINT1025935 @ hg38
Intron Retention
Gene
ENSG00000177359 | OVOS2
Description
NA
Coordinates
chr12:31138117-31139243:-
Coord C1 exon
chr12:31139073-31139243
Coord A exon
chr12:31138266-31139072
Coord C2 exon
chr12:31138117-31138265
Length
807 bp
Sequences
Splice sites
5' ss Seq
AGGGTAAGA
5' ss Score
9.21
3' ss Seq
TGTTGTTTGTTTCTTTAAAGAAC
3' ss Score
7.75
Exon sequences
Seq C1 exon
GTGTATAACATGGTTCCAAGTATAGAGCCGTATGGTTATTTCTACCATGGCCTCAATCTTGATGATGGCAAGGAAGACCCTTGCATTCCTCAGAGGGATATGTTCTACAATGGTTTATATTACACACCTGTAAGCAACTATGGGGATGGAGATATCTATAATATTGTCAGG
Seq A exon
GTAAGATCACTAAGGATTTTGGAAAATATTTCATCACAATTTTTAGTATTCATAATGCATATTAATGTTTTCTTAATTATGTAGTTTTCTTCCTATACTTTGAGATTCGTGTCTGTAATCTGCCAATAGAGTACATAGAAATTGTCTTATAAAAAGGAGATATTAATTTTGTTGATTTTAAAATTTTCTGCTGAAAATAAATCATGTAGCTATAATTACAAAACCTCACTTAAAAAAATAAGACAGCCTCCAATTAATACAATAAATCTTATGCAAAGATTGTCAAATCAAGAGGCTAAGAGAGTGTGGACTCCAGATATCCCTAGGCCATTAATGAGACATGCTGAGCCTTCCATGAAATAATCTCTATAATTAACATCACAAGTGTGTAAGAAAAGGGGTATTGAATCAGACAGACTTTATCAGGTTCCAGTTCTTTAATTTACTGAGTGTGCCGGGTGTGTGTGTGTGTGTGTGTGTGTGTTTGATGTTAATTAGGGTAATGATAGTGCTGATCTCATAAGTATTTTCCACTTAGGATGAAATGGAGAATAATGGAAAATACTTAGAAAAATGCTAGCACATAATAAGTGCTAGATAAATCATAGTGATTATAATTTTTTCTCTAAATTAGGGATTTTCCATAAGTCAAATAGAGGTAAGTTGACTTGTAACTTCTCAGACCTTTGTTAACACAGAAAATATGGATACTTATGATCCATTTATCTTTGCAATATAAATAATAGGCCTTTTATAGTTCTTGCATGAAAAGAATGAACAATATTTTTGTTGTTTGTTTCTTTAAAG
Seq C2 exon
AACATGGGTCTCAAAGTCTTTACCAATCTCCATTACCGAAAACCAGAAGTATGTGTGATGGAGAGAAGGCTGCCACTCCCTAAGCCGCTTTATCTAGAAACAGAAAATTATGGTCCAATGCATAGTGTTCCGTCTAGAATTGCATGTAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSG00000177359:ENST00000398963:14
Average complexity
IR
Mappability confidence:
NA
Protein Impact
ORF disruption upon sequence inclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=NA C2=0.000
Domain overlap (PFAM):
C1:
NO
A:
NA
C2:
NO
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Associated events
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
GTATAACATGGTTCCAAGTATAGAGC
R:
CTACATGCAATTCTAGACGGAACAC
Band lengths:
318-1125
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Autistic and control brains