GgaINT0105020 @ galGal4
Intron Retention
Description
Uncharacterized protein [Source:UniProtKB/TrEMBL;Acc:F1NEW8]
Coordinates
chr1:75846653-75848138:-
Coord C1 exon
chr1:75847970-75848138
Coord A exon
chr1:75846738-75847969
Coord C2 exon
chr1:75846653-75846737
Length
1232 bp
Sequences
Splice sites
5' ss Seq
ATGGTAAGC
5' ss Score
9.26
3' ss Seq
TATTCAATTTGTATTCCCAGTTC
3' ss Score
5.95
Exon sequences
Seq C1 exon
GACCCAGAACAAAATCAGATCTTCCAGTGGTTGGATGTATCATCTATGAATGGCATCATCCAGCTCTCATTCCCATTAATTGAGGAGCCAATTCTGGGGTCCTATCACATCGTTGTGGAGAAGAAGTCAGGGGATAAGGAGCATGAATACTTCACAGTGGAGGAATATG
Seq A exon
GTAAGCAAGCGCTGTGAACTTCCCCAGCACCAGCAATGAGGCTGGTTCTGCCTAAGTCTGATAGGAGATGTGAGTGAAGAGCTTAAGTGCTTTGAAATCTCCTATTCATGTTCAAAAAAGAAAGACATGGTGAGAGCTGAATGAACAAGTGAAAGCAAGAAGGAAAAAAAAGAAGTGGTGAGAAAGATAACATTTTTCAGGAGTTAAATTAGGAAATTAATTCTTTTCTGGGCTTGGCTCAAAATCACTCTGTGAGTTTGGGATCCATATTCTACCACCCGTGCATTACATTCTCTACCTGTTCAGAGGTAAAGCTAATGAGTCATGAATCATTCCTGTCCTGTTTCATGGAGATCATCAACGTAGGAAGAGCGCTAGAATAATATATGCAGCAGAAATCTTTATTCTCTGTCAGACATTAGATGACGGTTATTAGCATGTTACGGAAGAGGCCAGATAACCACTGTAAGAACAAGAAGGAAAAAAACAGGCAGTAGAGGTACCTCATAATAATCTACTTACTCTGGAATAGACCACATCAAGGGAGTCAGACTATTCATTTTAATATTACGTTTTAAAACTTATGATGGCAGATTTTCCTTAGTATCCTAGATCATTTATTTATTTGTTTGACTGTCTGTTTGTCTGTGTGATGACAGTAAAGCACCATTCCTGCTTGCCCTATGGAGTTTCTTCCTACCTCCCAGCTCTCTTTGCACAGGTGAAAGAGAAAAATTCTATTCTGGCTGTGTTGTCAGCATTACTGGTGTCTTGTGGCAAAAAAAAGGCTGAAAAGCAGATGTGACAATGCACTGGGACTTGTTTGGTTCCACTATTTTACTCACCCTGTTGCTTTTCTACTCAAGTGGGGATGGATTGCATAATATCTTCTGTTCTACAGGGATTAACTACTTTCAGACATCAACATCACTCCCACATTTCCCTTGAAGAAAATTTTCTTACTGTGGCTGTTATTATTAGTATGATTATTCTTGCATTTTAAAGAAGGTTTTCATTTTACCCATAAAGGTATTGTCTGATAACATCCTACAGCTAACTCTTAGATAGACTTTTCTCTCTCAACCATTTCAAAATGCTTCTGCCAACTCTTTTTTGTTGTTGTTGTTTTGTTTGGTTTGGTTTTGTTTTTAGGTTTTTTTTTCTGTCTTCCTCTTGTGCACCTGTCTATCATATGGTACTACTGATCAGTCATATTCAATTTGTATTCCCAG
Seq C2 exon
TTCTGCCAAAGTTTGAAGTGACAACCAGCATGCCCAGGAGGATCTCTTTCTTTGATGAAAAAATCAGGGTGAATGTTTGTGCCTT
VastDB Features
Vast-tools module Information
Secondary ID
ENSGALG00000011930:ENSGALT00000019460:6
Average complexity
IR
Mappability confidence:
NA
Protein Impact
ORF disruption upon sequence inclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=NA C2=0.000
Domain overlap (PFAM):
C1:
PF0183514=A2M_N=PD(55.3=91.2)
A:
NA
C2:
NO
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Other assemblies
Conservation
Zebrafish
(danRer10)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
GACCCAGAACAAAATCAGATCTTCC
R:
AAGGCACAAACATTCACCCTGA
Band lengths:
254-1486
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]