GgaINT0105023 @ galGal4
Intron Retention
Description
Uncharacterized protein [Source:UniProtKB/TrEMBL;Acc:F1NEW8]
Coordinates
chr1:75844607-75845079:-
Coord C1 exon
chr1:75844959-75845079
Coord A exon
chr1:75844717-75844958
Coord C2 exon
chr1:75844607-75844716
Length
242 bp
Sequences
Splice sites
5' ss Seq
CAGGTGATA
5' ss Score
4.58
3' ss Seq
CTTCTGGGTGTGTCTCACAGGTA
3' ss Score
9.64
Exon sequences
Seq C1 exon
CTGGAAAACAATGGTTGTCTCAGCACTGTTGTCTCCACCAAAACTTTTCAGTTGTACCGCAGTTATGCCAGGATGTATGCCAGCTTCAACATAGAAACCATCGTCACTGAAAATGGGACAG
Seq A exon
GTGATACTAAGTAAAAATTGGGAAGTAGCTAAACTGGGAAGTACCCTAAATCTCACAGGTGATACTTCTTGGGATGAATCTCCTGGATTCTGATCTCTTCACCAAATAATGAACAACTACCATTTTATCTGGGTAGCTCTCTGTCCATAAAATCACATCTCCGTACAGCTTTTCAAAAGAAACTGTTTTCTGCACATTTCTGATTTCTGTTTCCTTCCCTTTCTTCTGGGTGTGTCTCACAG
Seq C2 exon
GTATCCAGATGAAAAACTATGACTACGTTGCAGTCAGCCAAGAAAATGACAGAGTGATGTTCAGGAACATGGATCAGTACTACAGAAGGGGAATTCCTTACTTTGGTGAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSGALG00000011930:ENSGALT00000019460:9
Average complexity
IR
Mappability confidence:
NA
Protein Impact
ORF disruption upon sequence inclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=NA C2=0.000
Domain overlap (PFAM):
C1:
NO
A:
NA
C2:
PF0236911=Big_1=PU(1.6=2.7)
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Other assemblies
Conservation
Human
(hg19)
No conservation detected
Zebrafish
(danRer10)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
GGAAAACAATGGTTGTCTCAGCAC
R:
TCACCAAAGTAAGGAATTCCCCT
Band lengths:
228-470
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]