HsaINT1025952 @ hg38
Intron Retention
Gene
ENSG00000177359 | OVOS2
Description
NA
Coordinates
chr12:31149315-31150293:-
Coord C1 exon
chr12:31150173-31150293
Coord A exon
chr12:31149425-31150172
Coord C2 exon
chr12:31149315-31149424
Length
748 bp
Sequences
Splice sites
5' ss Seq
ACTGTATTT
5' ss Score
-4.25
3' ss Seq
GTGTTCATCATTCCTTACAGGTA
3' ss Score
10.61
Exon sequences
Seq C1 exon
TTGGAAAATGGTTGTGTTTCTCAAATTGTAAATACAAAAGTCTTCCAACTCTACCGTTCGGGATTGTTCATGACATTTCATGTCGCTGTAATTGTTACAGAATTTGGGACAGGAAATTACT
Seq A exon
GTATTTTTTGGACGACCTGGGGATATATGTATGGCAACTTACTGGGAGAAGCTTGTTGAGTTAGCACTAAGTACAAAATTCAGATTATTTCTAATTTAATACAACTGGGAATAGTTGCAAGTGCAAAAATTATTACTGAAAAATTTACAAGATTGCACAAAGTGAGTGTTCAATAAGTATTTGTTAAAAGAATGAAAGAAGAGGCCGGGCACGGTGGCTCACGCCTGTAATCCCAGCACTTTGGGAGGCCAAGGCAGGTGGATCACCTGAGGTCAGGAGTTCAAAATCAGCCTGGCCAGCATGGTGAAACCCTGTCTCTACAAAAATACAAAAAATTAGCTGGGCATGATGGTGAATGCCTGTAATCCCAGCTACTCGGGAGGCTGAGGCAGGAGAATCGCTTGAACCCGGGAGGCGGAGGTTGCAGTGAGCTGAGATTGCACTATTGCACTCCAGCCTCCAGCCTGGGTGACACATCAAGACTCAGTCTCAAAAAAAAAAAAAAAAAAAAACCAGAAAGAAGGGAGAAAGAGATTATTTAATTTGGAGTGGGAAAATCAGATTTAACTACTAATTATTTCTTGTTATTTAAAAAGGAGTTTGTGATTATGCCATTGTAAAGTGCTCTATATAAGCATACTTGATCAATATCATGATGCTATTCACACTGGGCAAGCTGGTCACATTTATATTGCTGTGGATGGTAACTTAGATATTTTCACTCTGCTGTGTTCATCATTCCTTACAG
Seq C2 exon
GTATGCAGATCAGTGAGAAGACCTCAGTTTTTATCACTCAATTGCTTGGAACTGTAAACTTTGAGAACATGGATACTTTCTACAGAAGAGGGATTTCTTATTTTGGAACT
VastDB Features
Vast-tools module Information
Secondary ID
ENSG00000177359:ENST00000398963:8
Average complexity
IR
Mappability confidence:
NA
Protein Impact
ORF disruption upon sequence inclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=NA C2=0.000
Domain overlap (PFAM):
C1:
NO
A:
NA
C2:
NO
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Associated events
Conservation
Rat
(rn6)
No conservation detected
Zebrafish
(danRer10)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
TGGAAAATGGTTGTGTTTCTCAA
R:
AGTTCCAAAATAAGAAATCCCTCTTC
Band lengths:
230-978
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Autistic and control brains