GgaINT0105029 @ galGal3
Intron Retention
Description
NA
Coordinates
chr1:79481671-79482876:-
Coord C1 exon
chr1:79482727-79482876
Coord A exon
chr1:79481842-79482726
Coord C2 exon
chr1:79481671-79481841
Length
885 bp
Sequences
Splice sites
5' ss Seq
AGCGTAAGC
5' ss Score
6.06
3' ss Seq
CAGTTGTTATCACCTCTCAGGTG
3' ss Score
6.22
Exon sequences
Seq C1 exon
CTCCAGCTTGAGTTCTCTGAGAAGCAGGCTTATCCAGGCTCTAAAATCAACATCCATCTTGAAGCTGCTGCCAACTCCTATTGTGCCTTGCGAGCTGTAGATCAGAGTGTCTTCCTTCTTCAGCCTGAGCGAGAGTTATCTGCTGAGAGC
Seq A exon
GTAAGCCACATGCCCAGTGCCGTTTTCTTTGAATCTAGGGACATCCAGAATGACAGTTCCTGTGCCCACCTCTTCTGCTGGCTATGTTTTTTTTTTTTTCCATGTAAACAGACATTTCAGTAATTGAAAAAAGGTCTATAGCATCTGTATACTTCAAGGCTGATGGTGGAATATTTACTTTTAGAAAGCATACCAGTGTTAAAAGGAGTATGACTAATGTAAAACTTTGAAAGTATCTGAGAAGTGGCTCAAATAGGCCTAAGACCCAGAAAAAAAAAAAAAAAAAGGCTTCAAATATCAGCTAGTAACTTTTCTGACTCAAATCTTCTCTCTGCATAACTCAGCAGTATCTCTTCATGCTCTTTGTTCAAATTTACCCTACAAAGCCATCACAACTCATAAAAAGAGGTATAGAGTCTAGACCTTCTTGCATAACATCAGCCAAGTTGCTTATTCATCTGTGTAGACATCGCTAGGTAAACCCATCATAGTCCATGGAACTGTTCACATGCACCCATAAATATTGAATACAAATGAGAAAGGAGTATGGGAAGAAACAAATCCTTGCGGTTAAAAATATATATACGTATATGATATATATGTAGTACTTCTGGAAACAAAAATAGAAAAAAAAAACAACAAACAGATATCCTGCTCATTTCATGCTTTAAGAGAGGCAGTTTTGTCTTGAAGCAGGAGAGTGGATATGTGCTGCACAACGAGGATGACAGAAGGAGCTGCACTGCAAACCCAGTCATACACTGGTTTTCACTGAACTTTCTCCTTTTTCATTCTATAGCCATGAAAGATTTTCATGGTGTGACAGAATTTTGCACCTGCCTGGGACCTTTCCTTGTTTTTACATCAGTTGTTATCACCTCTCAG
Seq C2 exon
GTGTACTACCGGCTTCATTTGAGTGATTTGTATGGCTATTATTACAATGGACTCAACCTGCAAGATGACCCACCAGAGGAGTGTACCCCAGTCAAAACCACTTTTTTTGATGGCTTGTACTATGAACCTGTCAATGTCAGCCATGATGGTGATGTCTACAGGATTTTCAGG
VastDB Features
Vast-tools module Information
Secondary ID
ENSGALG00000011930:ENSGALT00000019460:14
Average complexity
IR
Mappability confidence:
NA
Protein Impact
ORF disruption upon sequence inclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=NA C2=0.000
Domain overlap (PFAM):
C1:
PF077039=A2M_N_2=PD(25.8=78.0)
A:
NA
C2:
NO
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Other assemblies
Conservation
Human
(hg38)
No conservation detected
Zebrafish
(danRer10)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
CCAGCTTGAGTTCTCTGAGAAGC
R:
CCTGAAAATCCTGTAGACATCACCA
Band lengths:
319-1204
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]