GgaINT0105033 @ galGal4
Intron Retention
Description
Uncharacterized protein [Source:UniProtKB/TrEMBL;Acc:F1NEW8]
Coordinates
chr1:75835247-75836201:-
Coord C1 exon
chr1:75835973-75836201
Coord A exon
chr1:75835374-75835972
Coord C2 exon
chr1:75835247-75835373
Length
599 bp
Sequences
Splice sites
5' ss Seq
CAGGTACAT
5' ss Score
7.79
3' ss Seq
TCTTTCTCTCTGCATCTCAGATC
3' ss Score
9.48
Exon sequences
Seq C1 exon
TTCCACTGGAGAGGCTAATATCTTCTACACCGTCCCTGATACCATCACAGAATGGAAAGCCAGTGCTTTCTGTTTGCAGGATGATGCTGGGTTTGGCATCTCCTCACCTGTTTCACTGACAGCATTCCAACCATTCTTTGTGGATCTTGCCTTGCCATACTCCGTCATTCGAGGAGAAAAAATTAATTTAATAGCCAACATTTTCAATTACCTTGACAAGTGCATTCAG
Seq A exon
GTACATCAAGTTCCCTTTCAATTTCTATATGGTTTTCCTCTTCCCCAGAGTTCCCAGCATTGTTTTTCTGCCCTGCATATTGCATTAAAAATGCAGAAACAAGTATTTAACTTATGCTATAGCCTGACACATTACGCTCTCATCCTCTCTGACAGGATCCATTCCTGTGTCATTAGGAAAGTGTGGCCAGTGACCACTATAACTGGTACAAAGAAGATAAGAACCTGCTCCTTATCCCTACATGGTTCATTTATTTTTGCTCCTGAGAGAGAAATTTGAACAGAGTATATGGGTAGCATGCTCTCCCAAATAATATGTACTGAGTATGTAGCATATAGCAGAAAATCATAAGATGTGACTGATAAAATGAGCACAGACATTTTGGCATATGTCTGTCAAATGCAGCCAGTAACAGCAGGCACAAACTGGATAGGTTTGCTATTTCCTCAAATGAATGTCCCTTTCTTATTTCCAGGTACCATCTTACAGAATCAGATGACATAGTTTCTCCAGCAAGTGACTTTTTCCTGTGCCCTGAAGCCTAACTTCAGGGGCAGCCTACTTCATCTGTAATTTTTCTCTTTCTCTCTGCATCTCAG
Seq C2 exon
ATCAGTGCCATACTGGCAGAGTCAAGTGACTACAAGGCAGAAGTCCTTTCACCAGAAGGAAACACAGCAAGAGTGTGTGCCAATGAAAGAAAAACCTATATTTGGGCTGTTAGCCCCCTCAGTCTTG
VastDB Features
Vast-tools module Information
Secondary ID
ENSGALG00000011930:ENSGALT00000019460:19
Average complexity
IR
Mappability confidence:
NA
Protein Impact
ORF disruption upon sequence inclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=NA C2=0.000
Domain overlap (PFAM):
C1:
PF0020717=A2M=FE(83.5=100)
A:
NA
C2:
PF0020717=A2M=PD(4.4=9.3)
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Other assemblies
Conservation
Human
(hg38)
No conservation detected
Mouse
(mm10)
No conservation detected
Rat
(rn6)
No conservation detected
Cow
(bosTau6)
No conservation detected
Zebrafish
(danRer10)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
GGCTAATATCTTCTACACCGTCCC
R:
AAGACTGAGGGGGCTAACAGC
Band lengths:
343-942
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]