GgaINT0105034 @ galGal4
Intron Retention
Description
Uncharacterized protein [Source:UniProtKB/TrEMBL;Acc:F1NEW8]
Coordinates
chr1:75833447-75835373:-
Coord C1 exon
chr1:75835247-75835373
Coord A exon
chr1:75833569-75835246
Coord C2 exon
chr1:75833447-75833568
Length
1678 bp
Sequences
Splice sites
5' ss Seq
TTGGTAATT
5' ss Score
5.73
3' ss Seq
ACTGGTGTTTGGCTCTCCAGGTG
3' ss Score
9.37
Exon sequences
Seq C1 exon
ATCAGTGCCATACTGGCAGAGTCAAGTGACTACAAGGCAGAAGTCCTTTCACCAGAAGGAAACACAGCAAGAGTGTGTGCCAATGAAAGAAAAACCTATATTTGGGCTGTTAGCCCCCTCAGTCTTG
Seq A exon
GTAATTTTGTCTTTTGGTCACCCTAATTTATCTCAATTTTATCTTTCAACTTTTGTCCTTTCACTTTTTAATGAAGTATCAATAGTCCGCAGGCAGGCAGACAGCTCCACTAGTTACTACATTAACCTAGTATTGGACTTTTGCTAAAGCTCCCCTATGCACGAATATATGCACTGAATAAGTAGGTATTTGTTCTGGTGTTTCATCTCTGCTGATTTCAGTAGTTTATTTCTTGTCTATTTTAGAAAGAATTGTTCACTTCCCTTGTTATGCATGGAATACTGGCAGGATTTCATGAGGCTATAATAATTCAGTTGACAGTCTTATATTAAATCAACTCTATTCGGTAAGAATGAATGAGTGAAGAGGACATTGCTCCTTCCCAGTTTTACAGTTGTGTTAACTTACACTGTCTTTGAGTCAATCTTGTCTTTAAAAGAAAGATTTACAGTAGCTTGCATGTGTTAGTGCTTCAAAAGTTGAAATATATAAAAAAACTTTATTTAGCAAAAATTCTTCTGAAAATGAACAACAGATAAGCCTTTTCTTTAAAACATTGTTTCTAAATCAGTGTGACTGATTTCCTTCAAATTCGGTGGAAAATGTATAATAAGACAAGAAGTGGATATGCAGTGAAATAATGCTACAAAGCTGAAAAAAATAAAGCTGCTCTCTTCTAGCTATTTTGTCCCAAGAGGAAAACTCCTTTGCATCTCCTATTTGCAATGACTTCAGGGGTAAAGTGAGCAATGCCTGCCAAGCTGCTCACTTTAGAGTTGTTCTAGAGTGTTGCAGGAGCACTGAGCCCGCTCGTAAGCATTGCCTTCAGTTAATAAATTCTGTCTGAAGGAAAGAGGCAGCAGAGCATTGTCAAGTATTGCAACACTGCCCCTAGGCCAGAGAGAACAAAAGGCCAAGAAGAGGTAGAAACTGTTAGTGAGTACTGTCAGTTGTTTGGCATTCATCACCATTTCATTCCTTGTACTAGACCCTGTCATAGTTTCAGCTGGGATGGAATTGTTTTCTTCATAGTATCTGGTATGATGCTGTTTTGGTTCCAGGAGAAAAACAATGTTGATAATACACCAATGTTTATAGTTGCCTGCTAAGCAGTGTTGTACAGAGCCAAGGCCACTCATAGTGAAGGGCCCAAGGAGCTGGGAGGGAACAGCTGACTTAAATTGGCCAAAGGGATATTCCATTTCATATGACATCATGCAGAAAGAGTACTGAAGATGATGGGAATTCATTTCTTTCTCCCACTGCTCAGGAGACTAGCTGGGCATCCATCACGGTGGTGAGAAACTGCTTGTACACCACTTGTTATATACAGTTATATATATATAGTCATAACTGTTTTCCTTCTCCTTTTCTCTATCTTAGTAAATAGTTTTATCTTGACCCATGAGTTCTACTTTGTTCTTTTGATTCTCTCCCCCATCCCACCGGGAAGGGGAGGAGTGAGCAAATGACTATGTGGTGCTGAGCCTCTAGGCAACTGTTCCTTGCCATCCTTGGAGAGATGTGGAACATTAATTAGATTTGTTTCTAATGAGCTGCTTTTAGAGAGATACATTTATCAACAGTCCACAAGACAAGAAGGAGGCAGTGAAAGCCAGAGGTAACCATAGACACAGAAAATAACTTTCTTTTCTTGGACTGGTGTTTGGCTCTCCAG
Seq C2 exon
GTGAGGTGAAATTCACAATTACTGCTGAAGCCAAACTGAATACTAAAGGTGCCAAAAATAGCACACCACCGGAAGAGGAGTCAATTCGCACGGACACCCTGACTCAAACGCTACTAGTTGAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSGALG00000011930:ENSGALT00000019460:20
Average complexity
IR
Mappability confidence:
NA
Protein Impact
ORF disruption upon sequence inclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=NA C2=0.463
Domain overlap (PFAM):
C1:
PF0020717=A2M=PD(4.4=9.3)
A:
NA
C2:
NO
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Other assemblies
Conservation
Human
(hg38)
No conservation detected
Human
(hg19)
No conservation detected
Mouse
(mm10)
No conservation detected
Rat
(rn6)
No conservation detected
Cow
(bosTau6)
No conservation detected
Zebrafish
(danRer10)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
CCATACTGGCAGAGTCAAGTGAC
R:
ACTAGTAGCGTTTGAGTCAGGGT
Band lengths:
238-1916
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]