GgaINT0105034 @ galGal3
Intron Retention
Description
NA
Coordinates
chr1:79475805-79477731:-
Coord C1 exon
chr1:79477605-79477731
Coord A exon
chr1:79475927-79477604
Coord C2 exon
chr1:79475805-79475926
Length
1678 bp
Sequences
Splice sites
5' ss Seq
TTGGTAATT
5' ss Score
5.73
3' ss Seq
ACTGGTGTTTGGCTCTCCAGGTG
3' ss Score
9.37
Exon sequences
Seq C1 exon
ATCAGTGCCATACTGGCAGAGTCAAGTGACTACAAGGCAGAAGTCCTTTCACCAGAAGGAAACACAGCAAGAGTGTGTGCCAATGAAAGAAAAACCTATATTTGGGCTGTTAGCCCCCTCAGTCTTG
Seq A exon
GTAATTTTGTCTTTTGGTCACCCTAATTTATCTCAATTTTATCTTTCAACTTTTGTCCTTTCACTTTTTAATGAAGGATCAATAGTCCGCAGGCAGGCAGACAGCTCCACTAGTTACTACATTAACCTAGTATTGGACTTTTGCTAAAGCTCCCCTATGCACGAATATATGCACTGAATAAGTAGGTATTTGTTCTGGTGTTTCATCTCTGCTGATTTCAGTAGTTTATTTCTTGTCTATTTTAGAAAGAATTGTTCACTTCCCTTGTTATGCATGGAATACTGGCAGGATTTCATGAGGCTATAATAATTCAGTTGACAGTCTTATATTAAATCAACTCTATTCGGTAAGAATGAATGAGTGAAGAGGACATTGCTCCTTCCCAGTTTTACAGTTGTGTTAACTTACACTGTCTTTGAGTCAATCTTGTCTTTAAAAGAAAGATTTACAGTAGCTTGCATGTGTTAGTGCTTCAAAAGTTGAAATATATAAAAAAACTTTATTTAGCAAAAATTCTTCTGAAAATGAACAACAGATAAGCCTTTTCTTTAAAACATTGTTTCTAAATCAGTGTGACTGATTTCCTTCAAATTCGGTGGAAAATGTATAATAAGACAAGAAGTGGATATGCAGTGAAATAATGCTACAAAGCTGAAAAAAATAAAGCTGCTCTCTTCTAGCTATTTTGTCCCAAGAGGAAAACTCCTTTGCATCTCCTATTTGCAATGACTTCAGGGGTAAAGTGAGCAATGCCTGCCAAGCTGCTCACTTTAGAGTTGTTCTAGAGTGTTGCAGGAGCACTGAGCCCGCTCGTAAGCATTGCCTTCAGTTAATAAATTCTGTCTGAAGGAAAGAGGCAGCAGAGCATTGTCAAGTATTGCAACACTGCCCCTAGGCCAGAGAGAACAAAAGGCCAAGAAGAGGTAGAAACTGTTAGTGAGTACTGTCAGTTGTTTGGCATTCATCACCATTTCATTCCTTGTACTAGACCCTGTCATAGTTTCAGCTGGGATGGAATTGTTTTCTTCATAGTATCTGGTATGATGCTGTTTTGGTTCCAGGAGAAAAACAATGTTGATAATACACCAATGTTTATAGTTGCCTGCTAAGCAGTGTTGTACAGAGCCAAGGCCACTCATAGTGAAGGGCCCAAGGAGCTGGGAGGGAACAGCTGACTTAAATTGGCCAAAGGGATATTCCATTTCATATGACATCATGCAGAAAGAGTACTGAAGATGATGGGAATTCATTTCTTTCTCCCACTGCTCAGGAGACTAGCTGGGCATCCATCACGGTGGTGAGAAACTGCTTGTACACCACTTGTTATATACAGTTATATATATATAGTCATAACTGTTTTCCTTCTCCTTTTCTCTATCTTAGTAAATAGTTTTATCTTGACCCATGAGTTCTACTTTGTTCTTTTGATTCTCTCCCCCATCCCACCGGGAAGGGGAGGAGTGAGCAAATGACTATGTGGTGCTGAGCCTCTAGGCAACTGTTCCTTGCCATCCTTGGAGAGATGTGGAACATTAATTAGATTTGTTTCTAATGAGCTGCTTTTAGAGAGATACATTTATCAACAGTCCACAAGACAAGAAGGAGGCAGTGAAAGCCAGAGGTAACCATAGACACAGAAAATAACTTTCTTTTCTTGGACTGGTGTTTGGCTCTCCAG
Seq C2 exon
GTGAGGTGAAATTCACAATTACTGCTGAAGCCAAACTGAATACTAAAGGTGCCAAAAATAGCACACCACCGGAAGAGGAGTCAATTCGCACGGACACCCTGACTCAAACGCTACTAGTTGAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSGALG00000011930:ENSGALT00000019460:19
Average complexity
IR
Mappability confidence:
NA
Protein Impact
ORF disruption upon sequence inclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=NA C2=0.463
Domain overlap (PFAM):
C1:
PF0020717=A2M=PD(4.4=9.3)
A:
NA
C2:
NO
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Other assemblies
Conservation
Human
(hg38)
No conservation detected
Human
(hg19)
No conservation detected
Zebrafish
(danRer10)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
CCATACTGGCAGAGTCAAGTGAC
R:
ACTAGTAGCGTTTGAGTCAGGGT
Band lengths:
238-1916
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]