BtaINT0007452 @ bosTau6
Intron Retention
Description
Uncharacterized protein [Source:UniProtKB/TrEMBL;Acc:F1MI18]
Coordinates
chr5:101249002-101249451:+
Coord C1 exon
chr5:101249002-101249128
Coord A exon
chr5:101249129-101249329
Coord C2 exon
chr5:101249330-101249451
Length
201 bp
Sequences
Splice sites
5' ss Seq
TGGGTGAGT
5' ss Score
8.73
3' ss Seq
TTAAGAATTTTATTCCCCAGGAG
3' ss Score
7.23
Exon sequences
Seq C1 exon
GTGAGCATACAGCTGGAGGCCTCTTCTGCCTTCTTGGCCATCCCAGTAGAGAAGAATGAAGAATCTCAGTGTGTCTGTGGAAACAAGCAGAGAACCGTGTCCTGGGCTGTGACCCCAAAGTCACTGG
Seq A exon
GTGAGTGATAATGGTGTTCACAAATCCTACTTCTTTTGTTGTAATGATTGCTTTCCACTCCCACTCAGATGCATGCTTTTCTCTCCTCTTTTGACAATGATCAATGGAAGGAAAACAATTATATATATTGGAGAGGCTTAAAAAGAAGAAACCATTCAATATAGGATCACTGTTTAACTCCTTAAGAATTTTATTCCCCAG
Seq C2 exon
GAGAGGTGAATTTCACAGCTACTGCAGAAGCCTTGCGGTCTCAGGAACTATGTGGCAATAAGGTGCCTCACTTCCCAGAAATTGGACAGAAGGACACCGTTATCAAGCCTTTACTAGTTGAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSBTAG00000038461:ENSBTAT00000037743:24
Average complexity
IR
Mappability confidence:
NA
Protein Impact
ORF disruption upon sequence inclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=NA C2=0.000
Domain overlap (PFAM):
C1:
PF0020717=A2M=PD(4.4=9.3)
A:
NA
C2:
NO
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Associated events
Conservation
Human
(hg38)
No conservation detected
Chicken
(galGal4)
No conservation detected
Zebrafish
(danRer10)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
GCATACAGCTGGAGGCCTCTT
R:
TCAACTAGTAAAGGCTTGATAACGGT
Band lengths:
244-445
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]