RnoINT0121156 @ rn6
Intron Retention
Gene
ENSRNOG00000006709 | Pzp
Description
pregnancy-zone protein [Source:RGD Symbol;Acc:628643]
Coordinates
chr4:161816999-161817629:-
Coord C1 exon
chr4:161817503-161817629
Coord A exon
chr4:161817121-161817502
Coord C2 exon
chr4:161816999-161817120
Length
382 bp
Sequences
Splice sites
5' ss Seq
TGGGTGAGT
5' ss Score
8.73
3' ss Seq
ATCAAAATTTTTTCTCCCAGGGG
3' ss Score
7.81
Exon sequences
Seq C1 exon
ATCCATGTGAGCCTAGAGATGTCTCCTGATTTCCTGGCAGTCCCTGTGGGGAGCCATGAAGATTCTCATTGCATCTGTGGAAATGAAAGAAAAACCGTGTCCTGGGCTGTGACCCCAAAGTCGCTGG
Seq A exon
GTGAGTAGCGAAGTCATTGGCTGATTTCATGCTTTGTGCGCCTGTGGCTTTCTCTGGCTCTGATCCCAGTGCAGGCTTTTCCTCCTCTTGAATTTAACTGATCAACCAAGCCAAAAACTGTACACTGGGGGTAGGGATAACATTTAACACAAAATAACTGTTTTCCTGAATTTGCAAACATGTTTATTTGCTCTATGTGCGCCACGAGGCACGTGTGGAAGTCAGATGACAACTTGTGGGGAGTTGGTTGTCTATTTCTACCACGTGGGTCCCAGGGATCGAACCCGGGGTGTCAGGCTTGGCAGCGAGCATCTTCAAACAGCTGAGTTACCTCACTGGCCTAAGCATTACCATTTAAAGCCATCAAAATTTTTTCTCCCAG
Seq C2 exon
GGGAGGTGAACTTCACAGCTACTGCAGAAGCTTTGCAGTCTCCAGAACTGTGTGGCAATAAGGTGGCAGAAGTGCCAGCCCTTGTACAGAAGGACACTGTAGTGAAGCCCGTAATAGTCGAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSRNOG00000006709:ENSRNOT00000009467:20
Average complexity
IR
Mappability confidence:
NA
Protein Impact
ORF disruption upon sequence inclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=NA C2=0.000
Domain overlap (PFAM):
C1:
PF0020717=A2M=PD(4.4=9.3)
A:
NA
C2:
NO
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Mouse
(mm9)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
TCCATGTGAGCCTAGAGATGTCT
R:
CTCGACTATTACGGGCTTCACT
Band lengths:
248-630
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]