GgaINT0105035 @ galGal4
Intron Retention
Description
Uncharacterized protein [Source:UniProtKB/TrEMBL;Acc:F1NEW8]
Coordinates
chr1:75832756-75833568:-
Coord C1 exon
chr1:75833447-75833568
Coord A exon
chr1:75832808-75833446
Coord C2 exon
chr1:75832756-75832807
Length
639 bp
Sequences
Splice sites
5' ss Seq
GAGGTACAA
5' ss Score
5.13
3' ss Seq
ACCTGTCTGCAATCAAACAGCCT
3' ss Score
4.3
Exon sequences
Seq C1 exon
GTGAGGTGAAATTCACAATTACTGCTGAAGCCAAACTGAATACTAAAGGTGCCAAAAATAGCACACCACCGGAAGAGGAGTCAATTCGCACGGACACCCTGACTCAAACGCTACTAGTTGAG
Seq A exon
GTACAATTCAAAATATGCATGTACTTTCTGGTTTTGGGGAAAATCAGTTCTGTTACCTGTGATCTGGAAGAAATTAGCTGGTGTTAAGAGACAAGAAAGCTGACACAGATGGAGCTGTGTACAGTAGGCTTCTCCATATGAAACAGAGTGGAATTCACAACAATTTGGCATCCACTGTTCTTCTTTCTAGAACACAGAACATAAATGCCCTGACATTCTATGGATGTCAGCAGAGCTGTATTTGGAGGGGAGGAGACTCCATTCCTTATCTACATGTGCCATTTGCCTGTGACTGTAATACTGGGGAGAGGAGAGCAGATATGAAAGCAATGAGATTTGTCTTGAGCAGCCTAAAGTAGAAGAGACACGATTCTCCCCGAGTCCTCCTCAGAGCTGGAACTGTCTATTTTCTAAATGCTTTCTAAGAAAGAAAGTGTTCTGCACAGGCTATGCTGTAATAATGAGAGTAGGACATGGACAAGGAGATATTCTAATGGAGATGAGGCAGAACTGGGTACAGAGGGATGTACTCTTTGGATAGCTACATCTATGTAATACCTTACACTGTTTAATTGTTTATGGTTTCATGGTGATGTTTTTTTTTTAATTCTCCCTGACTACCTGTCTGCAATCAAACAG
Seq C2 exon
CCTGAAGGTATTAAAAAAGAATTGACTCAGAGCTCCCTCATCTGCACAAAAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSGALG00000011930:ENSGALT00000019460:21
Average complexity
IR
Mappability confidence:
NA
Protein Impact
ORF disruption upon sequence inclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.463 A=NA C2=0.000
Domain overlap (PFAM):
C1:
NO
A:
NA
C2:
NO
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Other assemblies
Conservation
Mouse
(mm10)
No conservation detected
Rat
(rn6)
No conservation detected
Cow
(bosTau6)
No conservation detected
Zebrafish
(danRer10)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
No suggested primer sequences
R:
No suggested primer sequences
Band lengths:
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]