GgaINT0105035 @ galGal3
Intron Retention
Description
NA
Coordinates
chr1:79475117-79475926:-
Coord C1 exon
chr1:79475805-79475926
Coord A exon
chr1:79475169-79475804
Coord C2 exon
chr1:79475117-79475168
Length
636 bp
Sequences
Splice sites
5' ss Seq
GAGGTACAA
5' ss Score
5.13
3' ss Seq
ACCTGTCTGCAATCAAACAGCCT
3' ss Score
4.3
Exon sequences
Seq C1 exon
GTGAGGTGAAATTCACAATTACTGCTGAAGCCAAACTGAATACTAAAGGTGCCAAAAATAGCACACCACCGGAAGAGGAGTCAATTCGCACGGACACCCTGACTCAAACGCTACTAGTTGAG
Seq A exon
GTACAATTCAAAATATGCATGTACTTTCTGGTTTTGGGGAAAATCAGTTCTGTTACCTGTGATCTGGAAGAAATTAGCTGGTGTTAAGAGACAAGAAAGCTGACACAGATGGAGCTGTGTACAGTAGGCTTCTCCATATGAAACAGAGTGGAATTCACAACAATTTGGCATCCACTGTTCTTCTTTCTAGAACACAGAACATAAATGCCTTGACATTCTATGGATGTCAGCAGAGCTGTATTTAGAGGGGAGGAGATTCCATTCCTTATCTACACGTGCCATTTGCCTGTGACTGTAATACTGGGGAGAGGAGAGCAGATATGAAAGCAATGAGATTTGTCTTGAGCAGCCTAAAGTAGAAGAGACACGATTCTCCCCGAGTCCTCCTCAGAGCTGGAACTGTCTATTTTCTAAATGCTTTCTAAGAAAGTGTTCTGCACAGGCTATGCTGTAATAATGAGAGTAGGACATGGACAAGGAGATATTCTAATGGAGATGAGGCAGAACTGGGTACAGAGGGATGTACTCTCTGGATAGCTACATCTATGTAATACCTTACACTGTTTAATTGTTTCTGGTTTCATGGTGATGTTTTTTTTTTTAATTCTCCCTGACTACCTGTCTGCAATCAAACAG
Seq C2 exon
CCTGAAGGTATTAAAAAAGAATTGACTCAGAGCTCCCTCATCTGCACAAAAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSGALG00000011930:ENSGALT00000019460:20
Average complexity
IR
Mappability confidence:
NA
Protein Impact
ORF disruption upon sequence inclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.463 A=NA C2=0.000
Domain overlap (PFAM):
C1:
NO
A:
NA
C2:
NO
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Other assemblies
Conservation
Zebrafish
(danRer10)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
No suggested primer sequences
R:
No suggested primer sequences
Band lengths:
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]