HsaINT0135673 @ hg38
Intron Retention
Gene
ENSG00000126838 | PZP
Description
PZP, alpha-2-macroglobulin like [Source:HGNC Symbol;Acc:HGNC:9750]
Coordinates
chr12:9162597-9163789:-
Coord C1 exon
chr12:9163668-9163789
Coord A exon
chr12:9162649-9163667
Coord C2 exon
chr12:9162597-9162648
Length
1019 bp
Sequences
Splice sites
5' ss Seq
GAGGTAACA
5' ss Score
8.1
3' ss Seq
TTTCTTTCCTTTCATCCAAGGCT
3' ss Score
6.32
Exon sequences
Seq C1 exon
GGAATGTGAACTTCTCAGTGAGTGCAGAGGCAATGCAGTCCTTAGAACTCTGTGGAAATGAGGTTGTTGAGGTCCCTGAGATTAAAAGAAAAGACACAGTCATCAAAACCCTGTTGGTGGAG
Seq A exon
GTAACATATTTTTGGGAGTCCCTAACAACTGTAAGAATGCAACACCGGGCGGTCACTCTTGAGACAACAAAGAACCATTAATATCATGCTCACACAATACATCCTGTAAGACTAATGGAATTTCCTGCCCTAAAAGCATTGCAGCAGACAACATTGCCAGCTATTGTAAATTTTTTTTCACAAATTATTTGAGTGCAATTTCCTTTTTTTTTTTTGAGACGGAGTTTTGCTCTGTTGCACAGGCTGAAGTGCAGTGTTGCGATCTCGGCTCACTGAAAGCTCTGCCTCCCGGGTTCATGCCATTCTCCTGCCTCAGCCTCCCGAGTAGCTGGGACTACAGGCGCCTGGCTAATTTTTTTTTTTTTTTTTTTGTATTTTTAGTAGAGACGGGGTTTCACCATGTTAGCCAGGATGGTCTCAATCTCCTGACCTCGTGATCCTCCCTTCTCGGCCTCCCAAAGTGCTGGGATTACATTGAGCGCAATTTCTTGATCTCCACCTCTCTCCTAAGATTCACATATCTCTCATACCCATTAGCTTTGATTTACTGCCCTTATTATCTCTTCCCATTTTCTCTCTACCACCCTCCCTGGTTCTTCAATGTTTTATGGATTTGTAATAATTCAATAACAAGTAGGATGTTATGTTCTCACTTATAAGTGGGAGCTGAATGATGCAAACACATAGACACATGGAGGCGAGCAACATATATGGGGCCTGTCTGAGAGTGGGAGTGACAGAAGGGAGAGCATCAGGAAGAATAGCTAGTGGATGCTGGGCTTAATCCCTAGGTGATGGGATGATCTGTGCAGCAAACCACCATGGCACACATTTACCTATGTAACAAACCTGCACCTCCTGCACATGTCCCCTTGAACTTAAAACAAAAGTTGGGAAAAAAAGAGTAGGATGGTAAACATCATTCGTGTAAACCCTACCCATCAAAGAAAGGAATCCATGTGGTTCTCTTGTCACCAGGATGTTTCTATCTTTTCTCCTTTTCTTTCCTTTCATCCAAG
Seq C2 exon
GCTGAAGGTATTGAGCAAGAAAAGACTTTCAGTTCTATGACCTGTGCCTCAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSG00000126838:ENST00000261336:21
Average complexity
IR
Mappability confidence:
NA
Protein Impact
ORF disruption upon sequence inclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=NA C2=0.111
Domain overlap (PFAM):
C1:
NO
A:
NA
C2:
NO
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Other assemblies
Conservation
Mouse
(mm10)
No conservation detected
Rat
(rn6)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
No suggested primer sequences
R:
No suggested primer sequences
Band lengths:
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Autistic and control brains
- Pre-implantation embryo development