HsaINT0135673 @ hg19
Intron Retention
Gene
ENSG00000126838 | PZP
Description
pregnancy-zone protein [Source:HGNC Symbol;Acc:9750]
Coordinates
chr12:9315193-9316385:-
Coord C1 exon
chr12:9316264-9316385
Coord A exon
chr12:9315245-9316263
Coord C2 exon
chr12:9315193-9315244
Length
1019 bp
Sequences
Splice sites
5' ss Seq
GAGGTAACA
5' ss Score
8.1
3' ss Seq
TTTCTTTCCTTTCATCCAAGGCT
3' ss Score
6.32
Exon sequences
Seq C1 exon
GGAATGTGAACTTCTCAGTGAGTGCAGAGGCAATGCAGTCCTTAGAACTCTGTGGAAATGAGGTTGTTGAGGTCCCTGAGATTAAAAGAAAAGACACAGTCATCAAAACCCTGTTGGTGGAG
Seq A exon
GTAACATATTTTTGGGAGTCCCTAACAACTGTAAGAATGCAACACCGGGCGGTCACTCTTGAGACAACAAAGAACCATTAATATCATGCTCACACAATACATCCTGTAAGACTAATGGAATTTCCTGCCCTAAAAGCATTGCAGCAGACAACATTGCCAGCTATTGTAAATTTTTTTTCACAAATTATTTGAGTGCAATTTCCTTTTTTTTTTTTGAGACGGAGTTTTGCTCTGTTGCACAGGCTGAAGTGCAGTGTTGCGATCTCGGCTCACTGAAAGCTCTGCCTCCCGGGTTCATGCCATTCTCCTGCCTCAGCCTCCCGAGTAGCTGGGACTACAGGCGCCTGGCTAATTTTTTTTTTTTTTTTTTTGTATTTTTAGTAGAGACGGGGTTTCACCATGTTAGCCAGGATGGTCTCAATCTCCTGACCTCGTGATCCTCCCTTCTCGGCCTCCCAAAGTGCTGGGATTACATTGAGCGCAATTTCTTGATCTCCACCTCTCTCCTAAGATTCACATATCTCTCATACCCATTAGCTTTGATTTACTGCCCTTATTATCTCTTCCCATTTTCTCTCTACCACCCTCCCTGGTTCTTCAATGTTTTATGGATTTGTAATAATTCAATAACAAGTAGGATGTTATGTTCTCACTTATAAGTGGGAGCTGAATGATGCAAACACATAGACACATGGAGGCGAGCAACATATATGGGGCCTGTCTGAGAGTGGGAGTGACAGAAGGGAGAGCATCAGGAAGAATAGCTAGTGGATGCTGGGCTTAATCCCTAGGTGATGGGATGATCTGTGCAGCAAACCACCATGGCACACATTTACCTATGTAACAAACCTGCACCTCCTGCACATGTCCCCTTGAACTTAAAACAAAAGTTGGGAAAAAAAGAGTAGGATGGTAAACATCATTCGTGTAAACCCTACCCATCAAAGAAAGGAATCCATGTGGTTCTCTTGTCACCAGGATGTTTCTATCTTTTCTCCTTTTCTTTCCTTTCATCCAAG
Seq C2 exon
GCTGAAGGTATTGAGCAAGAAAAGACTTTCAGTTCTATGACCTGTGCCTCAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSG00000126838-PZP:NM_002864:21
Average complexity
IR-S
Mappability confidence:
NA
Protein Impact
ORF disruption upon sequence inclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=NA C2=0.074
Domain overlap (PFAM):
C1:
NO
A:
NA
C2:
PF0020717=A2M=PD(2.2=11.1)
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Associated events
Other assemblies
Conservation
Mouse
(mm10)
No conservation detected
Rat
(rn6)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
No suggested primer sequences
R:
No suggested primer sequences
Band lengths:
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Autistic and control brains
- Pre-implantation embryo development
Other AS DBs:
FasterDB (Includes CLIP-seq data)
AS-ALPS (AS-induced ALteration of Protein Structure, links to PINs)
APPRIS (Selection of principal isoform)
DEU primates (Only for human)