GgaINT0105045 @ galGal4
Intron Retention
Description
Uncharacterized protein [Source:UniProtKB/TrEMBL;Acc:F1NEW8]
Coordinates
chr1:75822315-75822806:-
Coord C1 exon
chr1:75822682-75822806
Coord A exon
chr1:75822406-75822681
Coord C2 exon
chr1:75822315-75822405
Length
276 bp
Sequences
Splice sites
5' ss Seq
CAGGTAACT
5' ss Score
8.63
3' ss Seq
CAGAACTTTTCTCATTTCAGTTA
3' ss Score
6.64
Exon sequences
Seq C1 exon
ACAACCCTGAAATACAACATCCACTTACCGAAGAAAGCTGCTGGATTTTTTCTCTCTGTAGAGCCAGCCAATGTGTCCTGTACCAGCAACTTCCCACTGAAGTTTGACCTTGTCTTCTCTGCCAG
Seq A exon
GTAACTTCCTTTTACTGATCTACCCTTTTGCATTCTCAGTTTGAAGCATCTCAGAAGGATTTAAGTATAGGCAGTTAACTGCTACTGTGCAGGAAGACAAACAGGACCATATCCTGAAATCCTTCATTACTGATTTTTTTCAATATGTTATACATCACTGGGAAACCAGGACCATCCAATAAAGAGATTATCTGAGTTGTCTATGAGTTGGAGCTGAAAATGTCACTCACTGGTCTGCTCTCCAACTGCAGATTAACAGAACTTTTCTCATTTCAG
Seq C2 exon
TTACACGGGAAATCGTAATGTCTCCAACATGGCTATTATTGATGTGAAGATGCTCTCAGGATTTATTTCTGATAGATCTTCCCTGAAAAAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSGALG00000011930:ENSGALT00000019460:31
Average complexity
IR
Mappability confidence:
NA
Protein Impact
ORF disruption upon sequence inclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=NA C2=0.000
Domain overlap (PFAM):
C1:
NO
A:
NA
C2:
PF076779=A2M_recep=PU(24.7=71.0)
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Other assemblies
Conservation
Mouse
(mm10)
No conservation detected
Rat
(rn6)
No conservation detected
Cow
(bosTau6)
No conservation detected
Zebrafish
(danRer10)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
ACAACCCTGAAATACAACATCCACT
R:
CTTTTTCAGGGAAGATCTATCAGAAA
Band lengths:
216-492
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]