GgaINT0106211 @ galGal4
Intron Retention
Gene
ENSGALG00000006643 | HSPA14
Description
heat shock 70kDa protein 14 [Source:HGNC Symbol;Acc:HGNC:29526]
Coordinates
chr1:7308748-7309476:+
Coord C1 exon
chr1:7308748-7308852
Coord A exon
chr1:7308853-7309314
Coord C2 exon
chr1:7309315-7309476
Length
462 bp
Sequences
Splice sites
5' ss Seq
AAGGTAAAT
5' ss Score
8.88
3' ss Seq
AATTTTCTTCACCATGGCAGCAA
3' ss Score
4.44
Exon sequences
Seq C1 exon
GGAAGCAGCTGCAGCTGCTGGTTTTAATGTTATGAGGTTAATTCATGAACCCTCTGCAGCTCTCCTGGCTTACGGAATTGGCCAAGATTCACCCACTGGGAAAAG
Seq A exon
GTAAATATTTCACTTCTTAAACTTAAGCTGCTGTGGTTTAAATCTACAGAGACTTAACACATCACATTCTAGCCTGAGAAATGGGGGAGTGCTACACTGCCAAAATTTGAGGTTGGAATGTACAGTGTTTAAAACCTCTTCATTGTTCTGATTTTTCCCTTTTTTAAGACGTTGTCTTAAAGATTTGTCTCCGCATTGTTTTGCTCTATGAGCTGATTAGCTTGAAGAAAAACGTATCTCTTCTTCAGTGGGTTTACATAGCCAGTTCTTTAGGAAACATGGTCGAGTAGTGAGTGGTTACAGGATAGGTAAATACAAACAGCAGACACCAAATTTTCTGGGCAGAACTGATTAAAACCTGCAATACATTATACGGTAGTGGTGATTTTAGAAAGTATGCCAGGACCAGCATAATTTTAGATGGCTTATTAATGCTACTTTCAATTTTCTTCACCATGGCAG
Seq C2 exon
CAACGTGTTGGTTTATAAGCTTGGTGGAACATCGCTGTCTATCACAGTTATAGAAGTAAACAGTGGAATATATCGTGTGCTTGCTACAGACACAGATGATGGCATTGGCGGAGTGTACTTCACAGAAGCTTTAGCACAACATTTAGCATCTGAATTCCAGAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSGALG00000006643:ENSGALT00000010732:7
Average complexity
IR
Mappability confidence:
NA
Protein Impact
ORF disruption upon sequence inclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=NA C2=0.000
Domain overlap (PFAM):
C1:
PF0001215=HSP70=FE(10.7=100)
A:
NA
C2:
PF0001215=HSP70=FE(10.7=100)
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Other assemblies
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
GCTGCAGCTGCTGGTTTTAAT
R:
TGGAATTCAGATGCTAAATGTTGTGC
Band lengths:
257-719
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]