HsaINT0077903 @ hg38
Intron Retention
Gene
ENSG00000187522 | HSPA14
Description
heat shock protein family A (Hsp70) member 14 [Source:HGNC Symbol;Acc:HGNC:29526]
Coordinates
chr10:14851219-14852531:+
Coord C1 exon
chr10:14851219-14851323
Coord A exon
chr10:14851324-14852369
Coord C2 exon
chr10:14852370-14852531
Length
1046 bp
Sequences
Splice sites
5' ss Seq
AAGGTAAAG
5' ss Score
9.06
3' ss Seq
TACTTTATCTTCTCTTGAAGCAA
3' ss Score
6.73
Exon sequences
Seq C1 exon
AGAAGCAGCTAGAGCTGCTGGATTTAATGTTTTGCGATTAATTCACGAACCGTCTGCAGCTCTTCTTGCTTATGGAATTGGACAAGACTCCCCTACTGGAAAAAG
Seq A exon
GTAAAGATCATATTTGCAGTTTTAGGTTTTTTGAGTGCAGAAAACATTTTAGATTATAGAGATTATATCAGTAAAGATTATTATGTAATGCAGTGGTTCCAAACCTTTCTGGATGGAAAAACAGACTCTTGCCTAGAGTTTTTCAAATAGTTGAGAAAGATGTCCTAGGAAAGCACAGAAAGAATGTAATGGGAGAGAAGGTTGAGCTTTTATGCCCTTGTCTTGTCCCTTTTTTGAGGGAAGATTTGAAAGTTCGAGGCCTGGCCAGTTTCCAACTCAAGCTACGACACTGCTGATTTTTCTACCAATTCCAGTTATTAGACATGTTTGCAGATAATAGGTACTGTTATATACATTTGACAGGGCAGGAGATGGATTTAGCATGAGGTTTTGAGACTTCTTTTAATGGTGAAATACTAGAACATACTTATCCCTAATATAGCTGTCAATATGTCTTAATAGAATGGATAGTCGTTCAACTTTAGAGAAGTTAATTCAGATGCAGTGTTAATTTTACATAATTGTTTCACCTCATTATTCGTATCTCCTAGTTAAGCAAAGAAATATGTGTACATCATGAGGAAATTATTTTTAGATAAATCTGAGAATATCAAATTATGAGTTTTAATACATGGGGAATCGGGAATTAGCTCCTAATTTTGCATATGTAATATATCTACAGAACATGCAATTGCATAGTAACTTGCATAAGATTAACACATAGAATTTCTATGTTCAGTTCTCTTAAAATTCACTATAATCACAGATCTCTTGATTTACTTTGAAAAGTTCGTGTTTTGAACTCCTTACTCAGAAGAATACAGTTGTATCCACATGACTGAGGAAAAAAGAACTTTGATTTGGTTGCAGAACATCTCAGATCTAGGCTTGATTTGTCAATAAGTGACTATAGACAACTTAGTTATTCACCTGAGATTTTCTATTTCCTCATTTGTAAATTAAAGGGATTAAACTAAGTGACTTCTAATATCCAACTTAGTTTTAAAATGTTATTCCCTGATAACTTACTTTATCTTCTCTTGAAG
Seq C2 exon
CAATATTTTGGTGTTTAAGCTTGGAGGAACATCCTTATCTCTCAGCGTCATGGAAGTTAACAGTGGAATATATCGGGTTCTTTCAACAAACACTGATGATAACATCGGTGGTGCACATTTCACAGAAACCTTAGCACAGTATCTAGCTTCTGAGTTCCAAAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSG00000187522:ENST00000378372:7
Average complexity
IR
Mappability confidence:
NA
Protein Impact
ORF disruption upon sequence inclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=NA C2=0.000
Domain overlap (PFAM):
C1:
PF0001215=HSP70=FE(10.5=100)
A:
NA
C2:
PF0001215=HSP70=FE(10.7=100)
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Other assemblies
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
GCTAGAGCTGCTGGATTTAATGT
R:
GGAACTCAGAAGCTAGATACTGTGC
Band lengths:
256-1302
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Genotype-Tissue Expression Project (GTEx)
- Autistic and control brains
- Pre-implantation embryo development