GgaINT0106486 @ galGal3
Intron Retention
Gene
ENSGALG00000016946 | SUGT1
Description
NA
Coordinates
chr1:170011996-170013318:-
Coord C1 exon
chr1:170013265-170013318
Coord A exon
chr1:170012013-170013264
Coord C2 exon
chr1:170011996-170012012
Length
1252 bp
Sequences
Splice sites
5' ss Seq
ATGGTAAGA
5' ss Score
9.48
3' ss Seq
GTCTCTTTTTTTTCCTGCAGGAT
3' ss Score
13.1
Exon sequences
Seq C1 exon
ATGTAGATGATACCTTTACTGTTTGGATTAAAAGATGTGAGGAAATGTTAAATG
Seq A exon
GTAAGAGAAAGCACATTTACTTGATAGAGGATTTGATGTTCCCTGTTATTTAAAGCTGTTTCATTTCTTTCTGAAGGGCTGCAGTTTGCTTTGTACTTAGACCAACATTATGTTTTAAGGGAAGTCACGTTTTCTTATGCCTTGTTTCTCTCAACTGCATATCCTGAACTCTTTAGGCTTAGAGGGGTATGTAGTGAAAGTTCAGACAGCTAATTTTAACTGTGGAAGCGTGTGTCAGCTTGCTTTCTGAATCCACCATTATTTTCTTCAAGACCTGAGAATTTAAGTGGGAAAGAGCAACGAAAATCTGGTTGCTTTACTCTTTGATTTCATGTGGAGAGTGCCTTTGGGTACTAATTGCTGCTCTGCTGTCGTATCGTGGTAGTCAGTGGGTGTGCACACGGCTTCCTTTTGTATCTTTCTGCAGTTTGACACCCCTGGCAGTGAATTTACCTGCAGTGCTTAACTGCCTGCTGATTTTAATGGGCTGTATCAGAAGAGCTGCCTCTCTTTTTCCTCCACCTGTTGTGACCTCTCCCCTCTTTCTGTTACTTACTGGAGAATGGGGCAGCAGAAAGAATGCAAGTTTATATCAACGTGTTGCCTGAAAACCAATTCCAATGATTTTTATCTCTTTAGCATTATAAGGGAAACAAAGGGAGTTTTTCTTTGGCAATGCTTGATCTGAAATATTTCAAGAGAAACATTTAGAGGAGTAAATACTGAGCTACTGTTTACATTCAAGTGTTACAGTGTGTTTAAGGTCAAACCAGTGAATTTGTCTGCTAGGATTCCATCTTGCTCACCAGCTGTAGTTATCAAGCATGACATATATATTAGATGAGAAATTTGTTCTATATGAGGGATGGTCAAGCTAGCACAGGCTTGCAGGAAGTAGTTTCCATTTTCTTTTTTGCCTTGGTCTTATTAAATGAAGGTCTATATCCTTTCCTTGTAAGGAAAGCAATGCAAAGGTTGTTCCTCCTGTTAACTGGAGCATGTTTTGGGTTACAGTTGTATCTTTGCACAAGTTGTTTGTTGAAACGGGTAGCACGAAGAAAGCCTAATTAACAATAGAGGGTCATTAAGGCAGCCGATGAAAGGTAGAGCTGGTATGTTTTTAACTTCTGTACCATTGAGACTGGCATAAATGCAGAATGGCTTAGAGTCAGTGAAGAAAGATAAAATAAAGTCATGTGGGTTCACTTCTTTCTGACCATACATCTCTTTTGGTCTCTTTTTTTTCCTGCAG
Seq C2 exon
GATCACAGACAGAAGTG
VastDB Features
Vast-tools module Information
Secondary ID
ENSGALG00000016946:ENSGALT00000027390:5
Average complexity
IR
Mappability confidence:
NA
Protein Impact
ORF disruption upon sequence inclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=NA C2=0.833
Domain overlap (PFAM):
C1:
PF145241=Wzt_C=PU(17.1=73.7)
A:
NA
C2:
PF145241=Wzt_C=FE(6.1=100)
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Other assemblies
Conservation
Zebrafish
(danRer10)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
No suggested primer sequences
R:
No suggested primer sequences
Band lengths:
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]