BtaINT0143290 @ bosTau6
Intron Retention
Gene
ENSBTAG00000002137 | SUGT1
Description
Bos taurus SGT1, suppressor of G2 allele of SKP1 (S. cerevisiae) (SUGT1), mRNA. [Source:RefSeq mRNA;Acc:NM_001046203]
Coordinates
chr12:11159663-11160927:-
Coord C1 exon
chr12:11160874-11160927
Coord A exon
chr12:11159703-11160873
Coord C2 exon
chr12:11159663-11159702
Length
1171 bp
Sequences
Splice sites
5' ss Seq
ATGGTAAGT
5' ss Score
11.01
3' ss Seq
TTCTCTTTCGATTTGCCCAAATC
3' ss Score
-0.91
Exon sequences
Seq C1 exon
GTGCGGATGCTGATTTAACTGCTTGGATTAAAAGGTGTCAAGAAGCTCAGAATG
Seq A exon
GTAAGTGTGCAGATTTCCCATGGTCTTTCAATTTAAGAAGAAGTCAATGTTTGTCATTTTTTTTTGTTTTGAACTTTATAACTTATAATTTAAGTAGTGCATGTTCTAGTAGATTGGGATTTCCAAAGGTATTTTCATTTTTTTACCTGATTCCTTATGTTGAAAGGGAGATTCAAACGGATTTGTTTTGCAATGGTAAGAAATTACTGAGGAGTCTCAAGTGACTCCAGACTGTAAAATTAAACCAGTTTCTCTTATTAGATATGCATGGAGAATTGGTTTCCGTAATAATATGTTTGTGCCTTAGAAATCATGTATGTAATTTTGTCTATACATGTACTGTTATCTGAAAATGTTTCTTTTTTATGTTTTTTAACAGGATCACAGCCCGAGGTGGTAAGTCCAAAGTTTTTAATCCTTTGTGTTTTTACTTAATTATATTACTATTGAATATATTTGAGACAGTACTCTGAATGTACTTTCTGGCAGTTCCGCATGTCTCTAGGACAGTTTTACTTATTTTCTCCTCCAAATGCTGTCTCTTCCCTTCTTCTTTAGGAACAAGTTAGAGGCCACCAGTGACCCAGGGCAAGTCCTTTAGATTTATTAATAAGTAGTTTAGGAAAATCTGAATTGGTTAAAAAGTCACTTGTTTCTCAGTGGTCAACATAGATTGTTGCAGAGAGGCCGGGACCGGGGTCAGGCCGTATCAGGAAGGCACTGTGGAAGCCCTCCTCCATGGGCTTTTCCGGGGCAGTTTTGCCATCGTTAAGCCTGGAGGTGTTAACACTGCATTCCTGAAAATGGTTTTTTAAATGTTACTGTTATTTTCAGTTTAGAGCATTGCTGAATCCTGGAACTGGACATTTTATCTGTAATCTTTTCCAAACATATCTTCTGAAATTTTTCTCTTTTTTTTTGCTGCTTTTATTTTAGAAGAAAAATGATCTTTGAAATGGAAACGCATAAAATTTTTAAAATGTTGAATATTCTGATTTTTGTGAAGATGAATATTATTTAACATTAATGTATACCATGCTTTCTAGGAAGTTTTCATGTAATTATTCCATATCAAAGTAACTATAGCACTGGGTAAATTAATAATAAATACATTTTTAATATGCAGTTACTAAACTAACTCGTAAAAATCTTTCTCTTTCGATTTGCCCAA
Seq C2 exon
ATCAGTCTGCATCCCAGAGGACTCATCAGTCAAAAATCAA
VastDB Features
Vast-tools module Information
Secondary ID
ENSBTAG00000002137:ENSBTAT00000002771:10
Average complexity
IR
Mappability confidence:
NA
Protein Impact
ORF disruption upon sequence inclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=NA C2=0.292
Domain overlap (PFAM):
C1:
PF134141=TPR_11=FE(32.7=100)
A:
NA
C2:
PF0496911=CS=PU(1.3=8.3)
Main Inclusion Isoform:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Human
(hg38)
No conservation detected
Rat
(rn6)
No conservation detected
Chicken
(galGal4)
No conservation detected
Chicken
(galGal3)
No conservation detected
Zebrafish
(danRer10)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
No suggested primer sequences
R:
No suggested primer sequences
Band lengths:
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Pre-implantation embryo development