HsaINT0161637 @ hg19
Intron Retention
Gene
ENSG00000165416 | SUGT1
Description
SGT1, suppressor of G2 allele of SKP1 (S. cerevisiae) [Source:HGNC Symbol;Acc:16987]
Coordinates
chr13:53237231-53238192:+
Coord C1 exon
chr13:53237231-53237247
Coord A exon
chr13:53237248-53238169
Coord C2 exon
chr13:53238170-53238192
Length
922 bp
Sequences
Splice sites
5' ss Seq
GTGGTAAGT
5' ss Score
10.36
3' ss Seq
AAAATCAATCTGCATCCCAGTGG
3' ss Score
2.25
Exon sequences
Seq C1 exon
GCTCAGAATCTGAGGTG
Seq A exon
GTAAGTCCAAAGTTTTCATTCTTCATGTTTTTATTATTTTAAATTTCAGCTACCAAATATATTTGAGACAAGACTCAGGATGAGCTGTCTGATATTTAAATATTAAGCAATTCCATTTAAGTGCTGGTTCCTCTAGGCACTGAAATAAAATCATTTTTTGATAAATATAGAAGTTTCCAGTCATGAAAATTATTGGCCTATTTTAATGAATTTAGTGTGTGGTTAAAGTTGATTTCGTGTGTTTTAATATGGTCATGATGATCATTTATCTTTTCGTTACTAAAACCTTATTGCATTTATTTAGGTTCAACAGTTTGAATCACTTGTAGGGCTTTTTATGATAGGCTAAGACAAAAGTTAAAGAAAATTGGAAATTGACAGGGTCTTGCTCTGTCATGCAGGCTGGAGTGCAGTGGTGCCATCATAGTGCACTTGAGCTTCAAACTCCTGGGCTCAAGCAATCTTCCCACCTCAGCCTTCCAAGTAGCTGGGACTACAGATGTACACCACCAAGCCTGGCTAATTACTCTGTTTCTTTAAAACGATTTTTAAAACAATGTTATTTTAGTTTAGGAAGTTGCTGAATCTTAGAACTGGCCATTTTATATAAGCAACCTTTTCTAATCATGCCTTTAGAAGTTTTCTGTTATTTAAAGTTCTGTTATTTTAGAGCAAAAATCTTTTATGAAATTCAATCTAAGATTTTTTAAATGCTGAGCATTCTAATTTTTTTCCGAAAACTAGTGGTATTTAACAATTACAGTTACTATGTCTTTGAAGAAAATTTTCATGTAGTTATTTTATATCAAAATAACTGCAGTGTTGGGTAAATTAATAATACATGCATTTTAATAATACAGTTGCTAAACTGACTTGTAAAAATCTTTCTCTTTCAACTTACCAAAATCAATCTGCATCCCAG
Seq C2 exon
TGGACTCATCAGTCAAAAATCAA
VastDB Features
Vast-tools module Information
Secondary ID
ENSG00000165416-SUGT1:NM_001130912:8
Average complexity
IR-S
Mappability confidence:
NA
Protein Impact
No protein impact description available
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=NA C2=0.000
Domain overlap (PFAM):
C1:
PF134141=TPR_11=PD(1.9=16.7)
A:
NA
C2:
PF0496911=CS=PU(1.3=12.5)
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Associated events
Conservation
Rat
(rn6)
No conservation detected
Chicken
(galGal3)
No conservation detected
Zebrafish
(danRer10)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
No suggested primer sequences
R:
No suggested primer sequences
Band lengths:
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
Other AS DBs:
FasterDB (Includes CLIP-seq data)
AS-ALPS (AS-induced ALteration of Protein Structure, links to PINs)
APPRIS (Selection of principal isoform)
DEU primates (Only for human)