Special

MmuINT0154901 @ mm9

Intron Retention

Gene
ENSMUSG00000022024 | Sugt1
Description
SGT1, suppressor of G2 allele of SKP1 (S. cerevisiae) [Source:MGI Symbol;Acc:MGI:1915205]
Coordinates
chr14:80003277-80007084:+
Coord C1 exon
chr14:80003277-80003293
Coord A exon
chr14:80003294-80007052
Coord C2 exon
chr14:80007053-80007084
Length
3759 bp
Sequences
Splice sites
5' ss Seq
GTGGTAAGT
5' ss Score
10.36
3' ss Seq
TTTCAACTTGCCCAAACCAGTCT
3' ss Score
3.15
Exon sequences
Seq C1 exon
GATCAGAATCTGAAGTG
Seq A exon
GTAAGTCCTCTCATCTCTCATGCTTTGTTTAGTCATGTTAAATTTAATTAATCAAATATATATTTATGCTAGGGCTTGGGATGAGCTCTCAAATATTAAAGAGTTTTATTTAAATATTAGTTATCTGAAATAACTTTTTTTAAAAATAAAAGCTACAAGTTTATAATCATGGGGAATACTGGACTGTCCTAATGAATTTAGTATATAATCTAAGGTGCCTGGGTTTTTGAGTCATCAGGACGGTTATCTCCCGTCTTTTCTTTACCAGTATCCACAGCCATTAGGTTAAAGAATTGTCATGTGGAGCTTTTTTACAGTAGGCTTAAAGTAAATTGGAAATGCTTCTGTTTGGTTCATTTAAAAAAAAAATTTTATTTATGTGTATGAGTTTTGTGGTCTGTGTGTATACCTGTACATCAGACCCCACTAAAGATGGTTATGAGCTGTCACATGGTTGTTGAGATTTGAACTCAAGACTTCTAGAAGACTAGCCAATGCATTTCACCACTGAGCCATCTCTCTAGCCCCATTTGGGTTCTTTTTTTTTTTTTTTTTTTTTTTTTGGTTTTTTGAGACAGGATTTCTCTGTGTAGCCCTGGCTGTTCTGGAACTCACTCTGTAGTCAGGCTGGCCTCAAACTCAGAAATCCGCCTGCCTCTGCCTCAATTTGGTTCATTCTTAATGTTTGTTAACAGTTAAGGATTTTCATGTTCAAAGCATTGTTACAGTAGCAGTGCCAAGGCTGCAGAGCTGGCTCAGTGCATAAAAGCATTTGCTGCTCTTCCAGAGGATTCGGTTGCCAGTGTTTGCATCAAGCAGCTCACAACCACATGTGACTCTAGTAGTTCCAGAGTATCTGATACCCTCTGGTATCCTAGGATGCTTGTTCTCGTGTGGTGAGCAGACACTTGTGCAGGCACACGTACATAGAAATAGAAAATGAGTAAGTCTCTTAAAATACCATGAAATTATAAGGCAAAGTAACTTAAAATATTTGAATTTAATTTTTTGAAATTTCTTTAATGTATATTAGTGTTTTATCTGTGTGTATATCTGTGTGTGGTACCCATGGAAGTCAGAAGAGGCCATCCCATCCCTGGGACTGGAGTTGGCATATGTTTTTGATCTGCCATGTGGGTGCTGGGAATTGAACCTGGGTCCTCTGGAAGAGCAACCAGTGTTGATAACTGCTGAGCCAGCTCTCCAGCCCCAGGGTCAGTTTGGCTTTTCATCAGTCTAGACTTTCATATGTTAGACTTAAATTGTGACATACTGTTTTAGTGGTTGTTGTCACATACATAGTCAATAAAGACAATCACAGTGACTTGGGAAATATGTAGTCCTGACCTACTTTATGGATAATTACCTTTTTGAGATGCTTATTCATCTTTTAAGAAGATTTCCTAAGCCGGGAGTGGTGGCACACTCCTTTAATCCCATCATTCAGGAGGCAGAAACAGGTGGATTTCTGAGTTCGAGGCCAGCCTGGTCTACAAAGTGAGTTCCAGGACAGCCAGGGCTATAAAGAGAAACCCTGTCTCAAAAAACAAAAAACAAAAAAAGAAAAGAAGAGAAAAAGAAAAGAAAAGAAAGATTTCCTGCAGGTCAGAGGCAGAGGCAAGTGGATCTCTGAGTTTGAGGCCAGCCTGGTCTACAGAGTGAGTTTCAGGGCAGCCCGGGCTACACAGAGAAATACTGTTTGGAAAAACTGGGGGTTAAAAACCTGCAGCTAACAGCTATTTTGTTTCAGACAGAGTTCTTGGGAGTATTAGTCAGTGCATGTATATAGGCAAAGTTTACAACAGCTTTCAAAACTGAAGCCCTGTTCAACCACCTGTCTGTCCATGCCTGCCCTTCATTCCTAGATAACTGAGTGGTAAACGAGGAACTAAGTGGAGAGGACTTTACAGCTGACTTCCTAATTTACCTGTTAATGGTGTTTCTGTTCGGGCCTTAGAATATTTGGAATTGAATCTAGGTGTGTGCCTGGGCCAGGCTTTTGCAAGCACTGCAAGCTAAGAGAAGCAGTGTAGGGAAGAAAGGTTTGTTTTGGTTCATATGCTTAAGGAGACCAGATCATAGCAGCTTACATCATGGTGAACAGGAGACAAAGTGGGGCGCAGACAGGACGTCCAGTATACCTTCCAAAGGCATTCAGTTGCTCAGTGACTTCTTTCTTCCAGAAAGCCCCTAACTCCCAGAATGGCACCATCAGCTATGTTTAACCTTTGTGATCAGAGGATACTTAGAATCTAAGCTTGCACACAACAGAATGGTATTTGGCTAACAAAACCACAATTTGTCCAGTAATAAAGCATATATAGCTTTAGTGGCATATACCCTTTATTTTGGTCGGTCTATCTGTCTGTCTGTCTGTCTATCTATCTATTTATCTACCTACCTACCTAATGTGCCTGAGTATTTTTCCTAAATGTACATGTATGTACATCATGACATCAAGTGGGCATTGAATCTCCTGGAACTGGAGTTACAGATGGTTGTGAGCTGTCAGGTTGGTGCTACAAATCAAACCTGGATTTTCTGGAGAGCAGCCAGTTCTCTTAACTGCTGAACCATGTCTTCAGCCCCCATTTAGTCTATTGTGTCCTGTTTCCAGGTTACATTGTCCTTGTTCTAGTCGGGATCTGTGCTTGTTTCCTGTAGGCTAATGCTGGAGAGGAGTTCCAAGTTGGCGTCACACCTCTAGAATAGTTTTGCTTACTTCTTTGGTTGCTTGTTTTTTCATTAGGGACAAATTAGAGGCCACCCATGACTCAGGCATCTTCTTTTTTTTTTTTTTTTAAGATTTATTTATTTTATTTTATTTTATTTTTATTATATATAAGTACACTGTAGCTGTCTTCAGACACTCCAGAAGAGGGAGTCAGATCTCATTACGGATGGTTATAAGCCACCATGTGGTTGCTGGGATTTGAACTTCGGACCTTCAGAAGAGCAGTCGGGTGCTCTTACACACTGAGCCATCTCACCAGCCCTCGGGCATCTTCTTATCTCTACATAGCCTTGACTAGTAGTTGATAGTTTCAGCATATGGTTTAGGTAAGACCCATTTTGCTGGGTGAGAGTGGTGGCTCACCCTTGTAATTCCAGTACTTTCATTTCCTCATGGTTAGGGTATGTTGCAGAGACGCCTTAAATGTGTACAGTGGTGTTCTGAAGCTCACCCTCCACGTGGTCCTTTACCGTCTCTAGAGCAGTGTTTGATGGTTATAATTCAGCCTAAGGTTATACTGTCTTTTTTAAAATATTTATTTAGTTAGTTAGTTATATATTTATTATATGTAAGTACACTGTAGCTGACTTCAGACACACCCGAAGAGGGCATCACCAGCCCAGGTTATACTGTCTTAAAGCTGACTTTCTGTTGTTGCCACGGTCTCCTGTAGCCTGGGCTGCTCTTGTCACTGTGCTGCTGCCACACCCGTTGGAAGTGGTCTTCAGTTCTTGAGTTCTGTGTCTTTCAGCTGGATATACATACTACACAAGTCAGTTCTTCTAGTCATATTAGAAAGGTTTTGTTGTTTGCTGCAGCAGGCTCTCACTGTGTGAGTACAGCTGGTGTGGTACTCCTACTCCTCCTGCTTGGAAAAGCAGGCTGCCAGGCGGTAAGATTACACACTGCACTTCTTCCATATTCTAGAACTACAGGCCTCAGCTAATTAATAATACATGGACTTTTTAAATATAGCTGCTAAACTAACATGTAAAATATTTTTTCTTTCAACTTGCCCAAACCAG
Seq C2 exon
TCTGCATCTCAGAGGACCCAGTCAAAAATCAA
VastDB Features
Vast-tools module Information
Secondary ID
ENSMUSG00000022024-Sugt1:NM_026474:7
Average complexity
IR-S
Mappability confidence:
NA
Protein Impact





	

	
No protein impact description available





No structure available

		

			
Features


			

				
Disorder rate (Iupred):
  C1=0.667 A=NA C2=0.182
 
                        

				
Domain overlap (PFAM):

					





						

							
C1:
NO

							
A:
NA

							
C2:
PF0496911=CS=PU(1.3=9.1)

						

					

				








    
Main Inclusion Isoform:
NA





     
                   









    
Main Skipping Isoform:
ENSMUSP00000052942





     
      









    
Other Inclusion Isoforms:
NA
          









    
Other Skipping Isoforms:
ENSMUSP00000052942f1157A
  



Associated events






Conservation


Human
(hg38)
No conservation detected
Human
(hg19)
chr13:53237248-53238169 
HsaINT0161637
(SUGT1)
Rat
(rn6)
No conservation detected
Cow
(bosTau6)
chr12:11159703-11160873 
BtaINT0143290
(SUGT1)
Chicken
(galGal4)
No conservation detected
Chicken
(galGal3)
No conservation detected
Zebrafish
(danRer10)
No conservation detected
Fruitfly
(dm6)
No conservation detected




Primers PCR

	

		

			
Suggestions for RT-PCR validation

			

				
F: 
No suggested primer sequences

				
R: 
No suggested primer sequences

				
Band lengths: 

			

		

	





	
Functional annotations
(Submit an annotation)

	


There are 0 annotated functions for this event 


		










GENOMIC CONTEXT[edit]












INCLUSION PATTERN[edit]










Retrieved from "https://vastdb.crg.eu/wiki/Special:VastDB"