GgaINT0106893 @ galGal3
Intron Retention
Description
NA
Coordinates
chr1:183374417-183381828:-
Coord C1 exon
chr1:183381807-183381828
Coord A exon
chr1:183374568-183381806
Coord C2 exon
chr1:183374417-183374567
Length
7239 bp
Sequences
Splice sites
5' ss Seq
GAGGTACTG
5' ss Score
7.67
3' ss Seq
TGCTTTGTTTTATGTTTTAGAAA
3' ss Score
10.76
Exon sequences
Seq C1 exon
TTCATATTTACTCTCACAGGAG
Seq A exon
GTACTGATATCTACTAGTTTAAATCTCACTGAATGCTTTGCTAAAATGTCTTGTTACATAGTATTACAGTCAAGTGTTTAGGTTTTTTAACTTGTTTCATGCATCATCATGATATTTCCATGTTTCCTGGGTATTAAGAGTGATCTGTACTGCTGTTTCTGTTTTTGGGAGGGTTTGGTTGGGTGGTTTTGTGTTTTGGTGGTGTTTTTTTTTTTGGTTAGTACAAAGTTATATAATTTGCTTCCTGCAGTTGTCACTGCTCTTTAACTTCTTGTTACAAATGGCCATGTTTCAGTAAATACAGCTGATAAGACTAGTAGCTGTTGGGGTTGAGCAGCCCCTAGAAATACTGATTTCTCAATTTGTTTGGTTTTTTTTATTATTTTTATTTTTTTTTATTTCTGGTCTCTTCAAAGAGGCAGTGTTGTGGTTTCAGCCATTTCAATCAAACTGATTTAATGGCAGGCCCTCTTTGTCAGGTTGCAAACTACTTCTGTCTGACTGCATAGAATCGCAGAATGGCTTGGGTTGGAAGAAACTTCAAGGATCATAAACTTTCACCCTCCTGCCACAAGCAGGGTTGCCAGCTGCTAGATAAACCACTAGATTAGATTGCTCAGGGCCCCATCCAACCTGGCCTTAAACACCTCCAGGGACAGGGCATCCGCAGGTTCTCCGGGCAGCCTGTTCCAGCACCTCACCACCCTCTCAGTGGAGAAACTCCCAGTGTCTAATCTTCAAGTAATACTTAGTCTGGTATTAAGTAATCTCCTGTCTTACTTATCACTCAGCTTAAATAATCTCAAATCTGATACTGTGTATGCCTCTACAAATGGAAATAACTGGATGTTTTCTACTGCATCTCCCATAGTTTAAATGACCATTTCTTGACAAATAAAGACTAATGTCATTTCCACGTCCTTCTTGATCAGATTTGTTTTTTCTTGTGGGTTTTTGTTGTTTTTTAGTTTTTTGAGGCCACTTGGTTTTTACACCTCCAGTTTCTTGTGTCTGATACAAATCAAGTTGCTCTGGAAGATATCCTATTCTAATACCCCTTATTTTACCATTTCAGATGTCTTTCTTCAAATGCAAAGTCTGTTGCTCTTCAATTAAAAACCAAAACAAAAAAACCCACACTACATAGATAAGTTAGTAGTAAGTGCTCAGGATATTTCTCCCCTCTCCCATGTTTTGTAAATAAAGTGAAGTAGGTGCATCAGAAGTATGTTTCTGAAGAGAAGTACTTACAACAGGATTTTGTGAAGTGGTCTGCCTGGAAGCACAGGAAATGATTATGGAGAAGAAGCAAGGAGGTGATGTGTTTAGGTATTGATGTTAGAATGGGAATAGCCACATCAGTGTACTGCAGCACCTGGGATCGTTGAAGAAGGCTGAGAAAAAGCAAACCACAGAGCTGAAACAGGAGAAGTTTTCATTTAGTCAATAACTTTTTGAGGTAAGGGAAGAAGGGATTTTCAGCTCTGATTTCCTTAAATGTTTGGAGAGTGGAAATGAAACTGACAAAAAGAGAGGGGAGCACCAGCAGTGAGTGATGCCGGAGGAAAGTTACTGCACATGCTGTTCTTTTGGTTGTTCATCTTGTTCAGCTGAAACACAAATTGCTTGGTGTTCGAGGGCTGTAGAAACAAGTACTCCAACCTTTGCTCTCAGGCTTGTGTGAATGCTTTTGAGGTGTTTGTAATCTTAAAGTCTTCAGTTGGAGCAGGGAAGAGTTTACAGTTGTTCTCGTTAGAGAGTTTGAGTGTGGTATTACAAAAGACTGAATGAATAATATAGTTCCTTGTTTCTTTGCTGTTACAGACCCTGCTGACATCTGGTTCTTTTCTTAGATGTGTGTGTTGCTTCTGGATCCATCTGGACCATCCTTCTTTCAAATAAACGTGAAGCAGTTTGGCTGCTGCTTCCTTGACTGCCTTACTAATGAATCTCTATTATCCTAGAAATCCATGTAGTGAATAGCTGTACTGTTCTACTTAAATAATTTTTCTCTTCTCCACCCTTTACCATCCTGTTTGAACACAAGTTGACTCTGTTTCTGCACCAGAGTATTTTCTAGAAGCTTTCCCTATTTTTAATCTCATTTGTAATACTTAATTGTTATTTCATAAAGCCTACAGTATGTACAGACCTTTCTTATGTGGACCATATGAATTCAATTGTAGAGCACTTCCTCTGTCTCTAAACAAATCTTTGTGCTGCTATATAGCACTCTAGCAATCAGCTGGTCTTCTAGTGTTCTCAATCTCCTGGACCTTGCATGGGAGTGATTATGGCAAGAGCACTCTATTACACTGCAGCTTTTCTTCATCCTTCTGAAGGAATGTAAAGAGATAAGATAATGCTGCTCTTCTTAATGGAGAATAATAGCTTATAGCACAGGTGCCTAGATCTTAGGCACTAATACCCTTCATTGAGATACTCTTGCAGCCAAAAAGGTCAATAAAGGAGACTTCAATTAGTTTTAGTTGCAGACAGAAGTGAGGCTTATTTTTAAAGCGCTGTGAAATTGTAATGTTATTCTGATACTTACTCTTGGGCTTGATGTTTCTTTAAGTAGGATATATGCGAGCTCTAAACCTGAACCTTTCAGTAAGATATTAAGGAAGACTACTTCTGAAAGGATTATTGCTAATAATGGTAGGAACATAAATTACACACCTACCAAATGAATTTTATTTCCAGAAGTTTGCACTTCTGTTGCAGCAGTACCTTTATTTCTGGAATATACCCAGTTATTTTCTTGTCTTGATAGACTTTTGTAGCTATCAATTTGAGTGGAATGCTGTCCTAGCTGATAGAATGAAGATTTTAAATGTATGCTGAATTAATGAATCCTAAGAATTGGAAGCTGTGTGAAGTATTTTTTCTTATTTTTTTTCCTGAAATTACCAACTATGAGACACATCATGAGATAGACCTGATTTCTATAATGTAGAATAGATCTAGAAGTCTAATAGGAAGTCTGATTGTTTACAAAACGTGATGAAAGAATGAAAGTAAGAATGTTTATTTCAGTATTTAAATTTAATGCTTTGTGAGAGGCCAAAAACTAATGAGATCTAACTAAAATCTAGATGGATGAGTGAGGGAGAGGAGTACTCGGGCTTCAGTTTTCCCCTCAGGATATCATTGCCATTTTCTAGAAGTTCTGCCTATTAGCTTATCTTTTTCTACTTAACAATCTTCTTGGTGGTATTTTCTTTACTAATTTGGTAACAGTGTTTCTACTTAAATTTTCTTGAGCACATTTAAGGATGGTATTTTTAAACTTTTCATAGTTTACTGTGAAAACTCATAGGCAAAGCGTGGAGATGTAGCTTTTTGGATTTGCAGGAAGTTGTACATGGAAGGAGAATGCTTAGTACTCTATCATGATGATTGATGCTGAATTCATTCAATCTTTGAAGCTTTGAAACTGAGACTAATTTGAAATGCATAGATTTTATCTATTACCATTTTTTTTTTTTACCACCATTGAGGTGTCATGGAGAAAGCAAGGTGAGGTCAGTCTTTCATCTAGAATGGGAGATGACTGCCAAGAAAGCAGCTTTGGAGAAAAAGATTTGGGTTTTGTGATTGACAGGCTGAACAGAAATTAGCAGTGTGCCTTTACAGTAAAGTCATCCAGCTGTGTCCTGGGCAATACCACAGAATCACAGGATGGCTGAAGTTGGGTACACCTCTGGAGAACTGTGTCCATCCCTCTGTTCAACACAGGCCACCTAGGGACATGTTGCAAGAACCAAAGCCATAGTTCTGAGTATCTCAGAGGATGGAAACTTCACAGCCTCTGTAGACAACTAGACAACTTATTACTGTATTAGCAAGAGGGTGATGAACAGGTCAAGGGAACTTATTTTTCTCCCCTTGTCTGTAGTTCAGAGACTGATTCTGGAGCAAGGTATCCAGTTTTGGATTCTCCATGAAGAAAAATACTGACATATTAAATTAGGTCCAATGGAAAGCTACCAAGGTGTTTTCAAAGGCCAGGGAGGCTAGGCTTTGAGATATGAGTTCAGGTTTGAGAAGGCTAAAGGGAGTTGAGGGTGGTTAAATAGAAGGTGGGATTGGGCTGTTACAGAAATGCACAGTGGAAGGATGAGAGATGACAGACACTATTTTAAAACAAAGGATGTTTGATTAGATACAAGGAAATGCGGAGGTTTTTTGTTTGTCATTTGTTTTTAATACATGAGGTTGAGGAAATACTTCAGAGAGGTTTTTTGTTTTTCAAAATGATTTTGGAATGCCTGTCCTTGGAGATGATTAACTTGACTGAACAAGACCTGAGCAACTAGCTCTGGACCTTCACTGAACAGGGCACTGCACTTGATCTCTGGAGATCTCTAGAAGTCCTTTCCTGTCTATGTGATTCTGTGCTGCTGAAGTGAGGAACAAAGCAGTGATGTTTATAATGAAATCAGGAAGTTTTGTGTTTTGTTTCTTCCCCTCTTCACTTAGTCAATAACAAAGATTTCACTATTCCTTGTTCTGTTACTCTCTCTACTAATAGAGTTTTTTTGTCTCATGACCATGAAATATTAACGACACTGATACGGCTTTGTTTTTCTTAGTTTTCTTTCTTTTCTAAACTCCCTTTTCCTTGTGAATGGCAAGAATTATTTAAGTTCAATTAGAAAGAAAAATACTCCATGGTAAGAGAATGAGAACGGGTGTACTGGTTCACATCAGGAATTGCGATGCCTGCAGGGCATGGAAGTGGGCATTCAGGGAAGAGCGAGAACACGACAAGTGTGCTGATGATGTTTTCTCCTGAACATCTGACTTTCAAGAAGAAAGGATCCTGTTTTCTCTTTTTAGTGAATCTTTTGAGTGCTTGTAGGACTCCCAGTAAACACACTCACAGTGTTAGCATCCATGACAGTAAGAAGTTATGATGTTGTTATGTGAAGAGCCATCCCCTTTTGTTTGTCTTTCTGTTGAAGTTAAGTGAATTTTTATCTTAAAAAAGACAACAAACAGTTGATCTGTAATACCCTTCAATATACTGCTCCTGGTACTGCAGATCTGTCTTGCTTCTGGGCCAGAAACATGCCTCAGGAATCTTCCTCTACCTTATGTGCTTATGTGATTCTCCTCAGCTTTAGTGAATCATCATCTTATTGGTTATTGCAGCTTCGAGAATACTTTCAGAGAAAGGGTTCTCAAATTCTCTCCTACAAGATGCAGTTAATGTTGCAGATTCTCAGAGGTGAAAGTCAACCTATTGTGATGAATGTGAGAGTACAAATGTAGTGGTACCTGAGAACCATGAGAAGTATGCGGGGAAGCCTTTGTGTAGGACTATTAAAATATATTTTCAGTGCAGCTATATAATGCTGATCAATTAACAGCTTCAGATGCACATGAATCTCTTTAACAGCATTGATCTACTTTTTTTTTGATTCATTTTAATATTCAGACATAGAAGTTTGGGGAATGCTGTCAATAGTAATAAAAATACATGAAGTTCAGCTTAAACAAGATGATGACAAGTCTTTGGAAGCAACTGCTTCCAAAGTAAGCATAGTAAGCAGTGAGCAGCTTAGCTTACTATAATCTCTTCTTTAAAGTATTTTTGTCTTGCCATCTTTCATAGTCTGATTTTTATTTCAGACTGAGAACTTGTGAAGGTTCCACTTAACTCTATGTTGTTTTCTGGTTATATTCCTGAATTCTATCTGTTAAGCTGTATTATGATATTTCCACCGGGACTGCTAGATTTGTATTTCGTGTTGTTCTAGAAATACTAAGAGTATAGATGCACGTAGGTTTCCGACGGTTGTTTTTCAGTGAACTTTTTCAAAGAAGTGAAGTTCAATGTAAAGTGTGATCACCTGTATTCTCGCTGACATAACTTGAAGCATTCTTAATTTCTGGCTTTGCCTCTTCAGCATGCCAGAGGAGAAAAGCATGTATTGGCAGAATAGCTTCAATTCATAGGTCAGTGGCTGCATTTTGATCTTGGTACCTAGTATGAATTTTTCCAGTATTGTGGCTGATGGAATGATTATCAGGTACTGGGTATATTTTTAAAGACAAAAAATTAAAGCAAGATATGAAGGCAGAATACTGGAACTGTGTAAAATACTCTCCTATAGGTGAAAGCTTGATATCTTGGCACAGACTCCTTTTAGGAAAAAATCCACAGTAAAGGTTTCATTTAAGTGGCATGTGCAAATTTTGAAGTTGCTGTAGTATCTTGGAATTCTGTTGTTCTCTGCAAGGTGCTACACCCACTCTGTGGAAGAAGTGTCAGTAGAGTATTTTCTAATGCTCAATGAGGTGTCTGTCTGTTTGTCTGATATGACTCATCATAGTTTAAATTAGGAGTTCTCTGACGAAGGAAGGTGTTTAGACATGTCTTTATGGTGCATGAGATGCATGCTTCACTAATAGGTAAATAGTGCAAGTGGCAGGTCAGAATTACTGAGTTTTGTCTTCTTGCTTTACCACTGGTATTTCTGCTTGGTGGTATTTTTCTTTGCTTTTTATAGAGCATTTATTCCCTTCTCTGGGGAACTTCCTTGATTGACTACCGTATTGAGAAATGCCAGAATTCAGTGTATTGTGGGGTGCATGGAGTTGCAGTTCCTCGTTGGGTCAAATGAGGATCACAGCAACTCTGCAGCGTGTATTTTCTGTGTGGCAGACCAGAACTAAAAGACTTCAGAAGCTAGAAAAGTTCTCCAGTGAGTGCTTTTATTAAGCAGCTTCAACTAACTCATACTCAGTAATATTAAGGGTATTTGGGTGAAGAATAGAATGCTCTTTCCCCACGTTTATCACCATTATTTACATCGTGCGAAACTGCTATTTCTTGTCATGCAATCATTGTCCCACCAGCAAAGAGAGAGAAACTCTCGTTTCAAACTCTCTAACTCATCAGGACTCGTACTCTTCTGTCACAGATCACAGTTTGTAGGTGGTGGGTGGTTATTTTGTTATTTTTTCTGACTTTGTGTGTTTGTTTTTTGTTTTTACACAGAAATTTAATTTTAACCATTTTCCCTCCAGGAGGGAAAGACCCAACCGTAGTGCCAACTGCACTTGAGAAGATGACTGTGAGAGTCAGTTAATATAGGGAGGTTCTGATGGGGGAGAGAACTGCAGAAGTAAATAAGTTTTCCTCTGTGTTTGTTATACTAAAATGTAAAACTAAAAGCCAAACATAGTTTTAACTAATGAATTGTTTTGCTTTGTTTTATGTTTTAG
Seq C2 exon
AAATATGGCAAATTAACATCTTGTACTGGCTGCAGAGCTCAGTGCAGGTTTTTTGACATGACTCAGTTCATAGGACCTAATGGATATTTGGAGCCATACTGCTCAACTGCATGCATGAACACACACATACCAAAATATGCAGAATCACGAA
VastDB Features
Vast-tools module Information
Secondary ID
ENSGALG00000017139:ENSGALT00000027684:8
Average complexity
IR
Mappability confidence:
NA
Protein Impact
ORF disruption upon sequence inclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=NA C2=0.000
Domain overlap (PFAM):
C1:
PF064679=zf-FCS=PU(0.1=0.0)
A:
NA
C2:
PF064679=zf-FCS=PD(95.3=80.4)
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Associated events
Conservation
Human
(hg38)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
No suggested primer sequences
R:
No suggested primer sequences
Band lengths:
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]