GgaINT0108015 @ galGal3
Intron Retention
Gene
ENSGALG00000017146 | PARP4
Description
NA
Coordinates
chr1:183547378-183549299:-
Coord C1 exon
chr1:183549167-183549299
Coord A exon
chr1:183547849-183549166
Coord C2 exon
chr1:183547378-183547848
Length
1318 bp
Sequences
Splice sites
5' ss Seq
AAGGTGTGC
5' ss Score
6.3
3' ss Seq
ATCTCCATTTCTACACACAGCGG
3' ss Score
6.12
Exon sequences
Seq C1 exon
GCATAAAGGGAAAAGAAAAGCTACTGAAGTTGATTGCTACTCTTCTTGTGCTACAGTTCATACGCTGTGCAAATGAACTGCAAGGGATAGTCTTCAAATCACTGATGAAACTGGACAACTTAACAACTTCAAG
Seq A exon
GTGTGCTTTTAAAAAAATCTTATAATTTAATATTGTAATTTAAACCTTCTCAACAACATACAATTAATCTCATTATAGAGAGTAAGTGACTATGCTACAGAATGTAGCTGCAGAAAAGGGAAGGGAAAGTGTTGGTGATACTGGTGGCACACAGCTTCTTTTAAGAGGGTGGGTAGGAAGAAGGAATACTTTGCAAAATATAATCCAAAATTGAGAAGTATTTAAAGTAGGAAAAGATTTGTACCTCTTATCAGAATCATTGAATAATTCATGACCTCTTCAGGTCATCTGTTCCTTAAAGCAGAGCCAACTCAGATAAACTGTTCAAAATCCTGCCCAGCTGATTTTTAAGGATGGAGATTCCACCACTTCAACTTTCTCAAGACATCAAACATTTCAAACTTTTCATTCATGTCACTTTTGGCTCTTGGCCTTCATCCCTTTTTAGCATTTTATTTATGCATTGTTAATCTTCACAGGCATGCACCATAAAATACAATACCTCTGAAGTTGTTAGCGCAGGTGATTCATCACAGCACAACTTCCATGCTTTCCACTTCCCCTGGGGAATACTGATGCTAGCTCATTCTAACAATGCCCACTTACTTCTGTATGTCCCAGTGCTCCATTACCTTCTGAATATAGGGTTGCTGCATCTGGAAATTCCCTTTCATTTTGAGTGAAGCACATAATTGTCAGATGGGAAGTTTTTTGTTACAGAGGAAAGGCAAAGGTCTTAAAAGAAGCCTGAAGGAATAGGCCTTCAGTGAGTCTGGATTGCCCCAGACACCAACTGATTGCAGTGCCAAAATGAGAAGCTAATACCCTTAATGCTTTACCAGGGAATGTAAGAAGAGAATAAAGAAAGCAGGAAAGCCCTGCGGTCTTCCACCCTCTCTTGAAACTCCCTGACAGAGGAAAAAAGGGTTGTATAATTTGGGCTACTCTGAACACAAATAAAATCACATGGACTGCTGGATGAAAGCAGGCAGGGTAGACCACAAAAGTGAAAGAATTCTGACGCACAATTGTACAAATGAGTCAAGTTTGCCATTATGAAATGCACAGTACTTCACTGTGGGGACTGGAATAGCGCAAATGAATGCAAGTAATGATTATGTATATACATCCCATATAGAAGACTCTGAAAGGACGGGGCAGAGAAAATGATGTAGTTTTCCCTGACAAATGATATTTTATGTAGGCTGTGTTTGCTGTACTATAGATCACTTTCTCTTTCAAATGATTATAATTATTTCATTGTACATCTTACAATAGTATAGAATTTATTATAATAAATCTCCATTTCTACACACAG
Seq C2 exon
CGGTGTTCACTGGGCTTTTGAGTCCATCAAGAAGGCAACAGAGTGGGTAAAAAGAGTTGAAGGCCAATTTCCATCTATTTGCTATCGACTTGAACTTGGAAAAGACTGGGATTCTGCCACCAAGATGATACTGGGGATCAAATGTAACTAACAGCAGCTCTCTTTCCACTTAAAACATTTCATGATTGGGATTGTTTAAGTTAATAGCAATGTCGGCCTTTCTTTCTGTTTTACATATTTTAACCGAGTGATTTTCACCTTATGTTATTCTTGAATAATCTTCATAGTCACAGACAAATGCTCCTGGTGCTGTTATTGTACCTCTGTTGGTTTTATCTCTTCTGAACTCTTCTCTTCTTCTGTGAGAGCACCATAAGGCGTAGCGCAGTCACTCGGCTCAGTGCCGCGGTGTGTTCTGAGGGATACCGGTGTGCTCAGCAAAGCCCTAATAAACACCTTCACAGTACAACC
VastDB Features
Vast-tools module Information
Secondary ID
ENSGALG00000017146:ENSGALT00000027691:40
Average complexity
IR
Mappability confidence:
NA
Protein Impact
Alternative protein isoforms
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=NA C2=0.000
Domain overlap (PFAM):
C1:
NO
A:
NA
C2:
NO
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Human
(hg38)
No conservation detected
Human
(hg19)
No conservation detected
Cow
(bosTau6)
No conservation detected
Zebrafish
(danRer10)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
TCACTGATGAAACTGGACAACT
R:
AGCACCAGGAGCATTTGTCTG
Band lengths:
346-1664
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]