MmuINT0115471 @ mm9
Intron Retention
Gene
ENSMUSG00000054509 | Parp4
Description
poly (ADP-ribose) polymerase family, member 4 [Source:MGI Symbol;Acc:MGI:2685589]
Coordinates
chr14:57274319-57278635:+
Coord C1 exon
chr14:57274319-57274451
Coord A exon
chr14:57274452-57278074
Coord C2 exon
chr14:57278075-57278635
Length
3623 bp
Sequences
Splice sites
5' ss Seq
TAGGTACTT
5' ss Score
5.6
3' ss Seq
TAAACTTTTTTTTAATCTAGGAA
3' ss Score
8.59
Exon sequences
Seq C1 exon
GTACAAAAGGGCGAGAGCGTCTCCTGGATCTGATTGCCACTTTGCTCGTACTGCAGTTTCTTTATACCAAGTTGGAACAAGAAGGAATGGTTGCCAAGTCTCTGATAAAGATGGATGACGCCTTCATTTCTAG
Seq A exon
GTACTTCATTGTCCTAGTAAATGTTTTTAAAATTTGGTCTCTCTTCCCCTTATGTTCTGTTTGTTTTTGAGACCAGTTCTCACAGGCTGATTTGGAACTTGCTATGTCATTGAGATCAACTTCAATTTTGTAGCAGTCTTCCTGCCTCCCAAATGCTGGGACTGCAGGCTGTGCCATCATGCCTGGTTTGTAAATGATAATCTTAGGGGAGCCTTTGTTCACAGGTTACAGCTTGCTCAAAGGTTCTTTTAGCAGGATGACTGACTTGGGATTCTTACTTCAGACTTCATGGGAGCAAATCTTAGAGCGCATGTGCATGTTGATGCCAGAACATAGCTTTTTGGGCTCCTGGTTTGGTGCTCCACACTAGAGTGTGCTGCTCGTCTGTGCATTTAGAAGAGTCACATTATGATTGTTGGCCTGTGTGGTCTGCAACAAGAATGCAAATGGGAACCATGTGCCCCGTGTCTAAGGATTTAAAGTCATGAAGCAAACCTGGGACTGTACCTTAGGGATAGAGCACTTGCCTAGTGTGCACTGGGACCTGGCTGAGTCCTGCAGTCCTGAGCAACACACACACCACATACCACACACACACACACACACACACACACACAGGCACACAATACACCACACACACACACACACACACACACCACACACATACACGCACACATACACACATGGGCCCAGACACATACACCACACATGCACACACACACACACACACACCACACACATACACACCACACACACATACACACACACACACTACACACACACATACACACACACACCACACACACACACACACACACACACACGGAATAAGTTAAAGTAGCAACCAAGTCAGGGTGGCACATTCCTGTAATCCCACTACTGAAGAGGTTACAGATGAAAATCTTAATTTATGGGCCAGCCTAGGCTACACAGTAGCACCCTGTCCCAAAACAAAACAACAGGGAAAAAAACTATCAAACTATTAAATAAAATACATTAAAACATTCTTCCTGGAATAGTGGTGCACATCTTTAAGTCAGTACTCAGGAGGCAGACACAGGTGAGTCTCTGGGTTTGAGGTCAGTCTGATCTACCTAGCAAGTTACTGGCAGCCAGACATATATAATAGAGAGAGACTCTGCCTGTTTTAGTTAGGGTTTCTATTGCTGTGAAGAGACACCATGATCATGGCAACTCTTATACAGGACAGCATTTAGTTGGGGCTGGCTTACAGGTTCAGAGGTTCAGTCCATTATCATCATGGTAGGAAACATGGCAGCCTGCAGGGAGACATAGTGCTGGAAGAACCAAGAGTTCTACATGTTGATCTGAAGGCAGCGAGGAAGAGGTTCTCTAAGACCTGTGTAGGGTATCAGGCATTTGAGCTCACGAGTAATGTAAACAAGCTGAGGTGGTTTATATATGCTTGGCCCATGAGAAGTGGCAGTAGGAGGAGGTGTGCCATTGTTGGAGGAAGTTCATCAGTGTGGGGCTTGGCTTTGAGGTCCTATGCTCAAGCTCTACCTAGTTCAGAAGAGAGCCTCCTCTTGGCTGCCTGTGGGAGACAGTCTCCTTATGGATGCCTTTGGATCAAGATGTAGAACTCTCAGCTCCTTCTCCAGCACCATGTCTGCCCGGATGCTGCCATGCTTCCTGCCATGAGGATAATGGACTGAACCTCTGAACTTGTAAGCCAGCCCCAATTAAATATTGTCCCTTATAAGAGTTGGTCATGGTGTCTCTTCACAGCAATGGAAATCCTAAGACATAAGCCAAGCAGTAGTGTCCCACGTCTTTAATCCCACCACTCAGGAGGCAGAGGGAGGTGGATCTTTGAATCTGAGGCCAATGTGATCTACAGAGCAAGTTCCAGAATAGTCAGGGCTACAAAAAAAACCCTGCCTTCAAAACAAAAGAGTGGTACAAAAACATTCTCATTTTTATTATTAAAGTAAACAAAAGATGAAGTAATGTTCACAATTACCTTAAGCTGGGAATATACTGGTGTTCTGCCTTATCACCTTTGGTCAAGTGAAGAGAGCCAAGAATCCTCCTCCCAGGCCTTTCCCACGAGATAATGTGGACATACAAGGGCATGCCATGTCCTTGGTACATTTGTTGTGATAAATATTATTTGGGGGCTTCTACACTACCTTAAGACATTTAGTTCCAAAATAAGTGACATAAAACTTTTATATTTATAATAAGCCTTAAAACACTAAAGCTGGGTAGCTACCAGCCCTCTATGCTATTTTGTCTACTTTTCTGTCAGTAACCCCAAGATATCCCTTGCCATGTTTTGCCTGGGCCACTCCTACTCCATCAGGCCAGTCCCCATGGCCATGCGCTCATAATCCACTTACTCATGGTGGCTTCTACTTTTCTCCTCCTCTCTCTCTTCCTTGTGTTTCCAGCCTCAAGCCTAGGGAATCCTCAGCTCTGCCTACCTCTCTTCTGCCCAGTTATGGGCTGTAGGCATCTTTATTAACCAATCGTGAATAACTTGGGGGGCAAAGTTTACACAACAAAATCTGGTATACTTGAGGATCTGCTCATCTTAAAGCAACCAGATTTGGGGGTATAGAATCTGGCATTTGAATACAAGCAGCACCAGGCCAATCTCCTGCATACATTCACTGATTATAGTGATTATGCAACTCTTTTTAGAAGACCGCTGTCTTAGTCAGGGTTATTATTGCTGTAATAAAACACCATGACCAAAGCTACTTGAGGAGAAAAGAGTTTATTGTGCATATACTTCCACAGCTCATCATTGGAAGAAGTCAAGGCAGGAACTCAAGCAGGGCAGGAACCTGGAGGCAGGAGCTGATGCAGAGGCCATGATGCAGAGAGATGCTGCTTACTGGCTTGCTCCTCATTGCTTGTTCAGCCTGCTTTCTTATAGACCCCAGGACCACTAGCGCAGGAATGGCCACACCCACAATGGTCTGGACCCTGCCCCATCAATCATTCATTAAAAACTGTTCTACAGGCTGGTCTATATCCTGATCTTACGGAGGCATTTTATTGAGGTTTCTTCATCTCTGATGATTTTGACTTGTGTCAACTTGACATGAAACCATTCAGCACAGCTACCTTCTGGGAATAACATTCTGCCCTCTGCCCAATCCATAGTTTACTATAAGTTCACAGCTTTCTCACTCAGCTACACACACACACACACACTAATAAGTGTAGGTCTTACAGCTGAATCTCAGGTGGTCTTCAAGTATCTGAGACAATTTGAAAACCCCCAGTCAGTGATGATCAAAACGGGCCTCAAGGACACTAAAAAAGGAGCAACAGGAAACAATATTAAAACAAAAACAAAACAAAACAAAAAAAACAAAACAGAAAAAGCTGCAGCTCTCCCAAGAGAGCAGCGGGGTGGAGGAGCAGGGGAGCCGGGCTGCTGTGCACATTGGGAACTGGGAAGTGAGGCAGGTAAAAAACTAGAAATGTACTGAGTTCAAAATCCCCATGGCAGATGGAAGTCTCAAGATTTTGCTTTTATTAAAATCTTCATTTTTGACAGAATCATTTTATCCAATACACTGTTATAGATTGAATACCACATTGCCTTTCACATATTCTGAACCAATATAAACTTTTTTTTAATCTAG
Seq C2 exon
GAATATTCCATGGGCTTTTGAGAACATAAAGAAAGCAAGAGAATGGGCCAGAAAGACAGAAGGACAGTATCCATCTATCTGCCAACGGCTTGAGCTGGGTAAAGACTGGGAGTCAGCCACAAAGCAACTACTGGGAATTCAGCCCCAAGCCAACACTTCTCTTCACCGAATTCTATACTACAGCCAAGGCTGAAGCCAATGAAATTGCATTTTAAAACTTTCTTTTATTTCTTTTGTTATTGTTTTGTTTTTGTTTTTTTTTTTTTCAAGACAGGGTTTCTCTGTGTAGTCCTGGCCATCCTGGAACTCACTCTGTAGAGCAGGCTGGTCTCACACTCAAGGGATCTGCCTGCCTCTGCATTCCAAGTGCTGAGATTAAAGGCATCCACCACTGCTCTGATGCCTTTCTCATATTTCTATGTAGAAAATAATCAAATAGTAAAATGTACCAATAATGACGTGTAATACGTGTTAAATGTAGCTACAGCCCCTTTAAAATAAAATTAATGGAAAGAATTGATTAATCATTTAACAACAATAAAAGCTGTAAGAACTAATACT
VastDB Features
Vast-tools module Information
Secondary ID
ENSMUSG00000054509-Parp4:NM_001145978:34
Average complexity
IR-S
Mappability confidence:
NA
Protein Impact
Alternative protein isoforms
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=NA C2=0.000
Domain overlap (PFAM):
C1:
NO
A:
NA
C2:
NO
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Other assemblies
Conservation
Human
(hg38)
No conservation detected
Rat
(rn6)
No conservation detected
Cow
(bosTau6)
No conservation detected
Chicken
(galGal4)
No conservation detected
Zebrafish
(danRer10)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
No suggested primer sequences
R:
No suggested primer sequences
Band lengths:
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Pre-implantation embryo development
- Muscular differentiation time course
- Spermatogenesis cell types
- Reprogramming of fibroblasts to iPSCs
- Hematopoietic precursors and cell types
Other AS DBs: