GgaINT0108946 @ galGal3
Intron Retention
Gene
ENSGALG00000012890 | DGKI
Description
NA
Coordinates
chr1:59635057-59636030:+
Coord C1 exon
chr1:59635057-59635112
Coord A exon
chr1:59635113-59635967
Coord C2 exon
chr1:59635968-59636030
Length
855 bp
Sequences
Splice sites
5' ss Seq
GGGGTGAGT
5' ss Score
7.93
3' ss Seq
TGCTCTTGTTTCTTTTGCAGGCA
3' ss Score
11.72
Exon sequences
Seq C1 exon
AAGCAAATCCAGAGAAATTCAACAGCCGATTTAGAAATAAAATGTTTTATGCAGGG
Seq A exon
GTGAGTTGTGATTCATTTTACAGAATGATGTGATATTAGTTGCTTGGATGTTTTACTGTATCCCTTCTCTCTCACTTTCTCGCACTGGGGCTAATGCCAATTCATTTTGCTTGTTGCAATTTACAATACACGTGTCTTCTTTCTGGCAATGACTCACGTGCCTGTTTGAGAGTGCTGGTTGTCTTACAGTGCTCCTTTAGACACAGCACTGATCATGTTTCACTCCCCCTGCTTCTGGCTCACAAGACTCTCGGCAAAGAGTTCCAGTTTTTCCAGTGTTTGGTCAGCACGCTGGTACTGGGCTTCCTGGAGAAATTCTCCAAGTATTAGCCTGCATCTTTTTGGCTTTGAGGAGTTGTCTTGGATGTATGGTCATGAGTAGTAGAGGTCAGTGATCGGCTATTTGGAGTGACTTATTTTCATATTTTCATATGTGAATGTGCAAATAAAAAAATAAGCTTTTTTATTCAGGAGAGATGCGTACAATACTTTATTTTAGAGCTCAGTTTAAGGAGACACACTAGTTTGATAATACATGGCATACTGTATGGCTTACCAGAGGATGACTTTTAGCATGCCCATGTGCCTTCATGGCACATGACACATAGCAATAAATGTGAGCAAGAATTTGCATTTATGCCACTGGGTACCAAAGGACATTCTCTGGCTAACCTCTCAAAAGGAGTAGTGTTAGAACTTTATAAATAATACATATATATAAGTCATATTTTCTGAAAGCAGGAAAGAATAGGTTTAACAAAGGGATAGCACTAGGTAATGAGCTCTCTGATGAGATAAGAAATTTGGAAAGAGAGGAGGCAATGACAACCATTCCTGCTCTTGTTTCTTTTGCAG
Seq C2 exon
GCAGCCTTTTCAGACTTCTTGCAAAGAAGCTCAAGAGATTTATCCAAGCACGTTAAAGTTGTG
VastDB Features
Vast-tools module Information
Secondary ID
ENSGALG00000012890:ENSGALT00000021020:16
Average complexity
IR
Mappability confidence:
NA
Protein Impact
ORF disruption upon sequence inclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=NA C2=0.000
Domain overlap (PFAM):
C1:
PF0060914=DAGK_acc=FE(11.4=100)
A:
NA
C2:
PF0060914=DAGK_acc=FE(12.7=100)
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Associated events
Other assemblies
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
No suggested primer sequences
R:
No suggested primer sequences
Band lengths:
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]