MmuINT0048828 @ mm9
Intron Retention
Gene
ENSMUSG00000038665 | Dgki
Description
diacylglycerol kinase, iota [Source:MGI Symbol;Acc:MGI:2443430]
Coordinates
chr6:36969916-36971265:-
Coord C1 exon
chr6:36971210-36971265
Coord A exon
chr6:36969979-36971209
Coord C2 exon
chr6:36969916-36969978
Length
1231 bp
Sequences
Splice sites
5' ss Seq
GGGGTAAGT
5' ss Score
9.65
3' ss Seq
TTCTTTCCCTTGTGGTGTAGGCA
3' ss Score
7.91
Exon sequences
Seq C1 exon
AAGCAAATCCAGAGAAATTCAATAGTCGTTTTCGAAATAAAATGTTCTATGCAGGG
Seq A exon
GTAAGTATTGTTTCATTTTAGAGCTATTAATATTACTTAGTGGCAATTCAGAAAATGCTAAAGAAACTAACAACATCAAGCTTATTAATGCACACCTCAGACACTTCCATACACACACACACACACACACAAATATATATATTCCATATATATATTTATATATAAATATATAAAATCTTCACTAAGGAGTTAAAGAGAAGAGATATTTTCTGAGTGGTCAGCAAGGCAGTTGGTGTTGGGTGTTGGCTGTGTTTAAAATTTAAGCCCTCTAAGTGTCGATGACTTTTTATGGAGTGATGCAAAACAGATGTCCAAGAAGAAATTGGGAAGAATAGTTTGATGGGAATATATATATATACAATATTCTGGTTTAGTTTCCCCTTTCTGTGATAACATATCCTGATGAATGCAATTAAGGAAAAAAGAGTGATTTGACTCACAATTCTGGGTCACATTCTGCCGTTTGGGGGAAGTCAAGTGGCAGTTACTTGAAGTAGCTTGTTACATCCACAGTCAAAAGGAGAGAGCAAGGAATAAATGCACTTGTGCTACTCTTACACGAATTCTTTACCCCTTTACAATCCAAGATCCCCTGCCTAGGGAAAGGTGCCACCCACAATGGAAAGGTCTTTCTACTAATCAAGATGCTGCCCCACTCCCACAGGTGGCATCAGGACACAGGGCAACTTAATCTAGACAATCCCTGATTGAAACTCCTTTTCCAGGTGATTGGAGACCATGTTAAGTTGATAACAGCACCCACCACAGACAATCTTAGTTCAGGCTATAGTTTTCAGCAGGGTGTGTACCCAGTGATTTTTGGATGAGAATTTGGCAGAACATAGAGCTTTTAATGGAAATACCCATGAGACTAAAGCAAGGGCCTTCCTTTTCGCTCTTGGGGGACATTCCTAAAAGTGATCTTAGCATTGATGGATAGGTAGGATGTTAACAAGGGCCTTCAGAATAGATCTGCCAAGTGACTCTGGGATTCACACACATTTTTACCTTCCTCCTATAATCTTAAATGTAATTACAGGTTATAGTCTGAAAACAAAGATTTTCACATGGCAGACATGGCTCTATTTTACCTTGAGTTCAACCAAAGGAGAAATTGTTTTCTATTTGTTCATAGTGCAGAATCTTGGGAAAATGTCTATTGTGTTGAAGAAAGGATTTGGTGGAAACTATATAACAAAGAATTCTTTTTCTTCTTTCCCTTGTGGTGTAG
Seq C2 exon
GCAGCCTTTTCTGATTTCCTACAAAGAAGTTCTAGAGATCTATCCAAACACGTCAAAGTTGTC
VastDB Features
Vast-tools module Information
Secondary ID
ENSMUSG00000038665-Dgki:NM_001081206:16
Average complexity
IR-S
Mappability confidence:
NA
Protein Impact
ORF disruption upon sequence inclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=NA C2=0.000
Domain overlap (PFAM):
C1:
PF0060914=DAGK_acc=FE(11.4=100)
A:
NA
C2:
PF0060914=DAGK_acc=FE(12.7=100)
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Associated events
Other assemblies
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
No suggested primer sequences
R:
No suggested primer sequences
Band lengths:
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Pre-implantation embryo development
- Muscular differentiation time course
- Spermatogenesis cell types
- Reprogramming of fibroblasts to iPSCs
- Hematopoietic precursors and cell types
Other AS DBs: