GgaINT0109016 @ galGal4
Intron Retention
Description
Uncharacterized protein [Source:UniProtKB/TrEMBL;Acc:E1BZ82]
Coordinates
chr1:24102206-24103424:+
Coord C1 exon
chr1:24102206-24102340
Coord A exon
chr1:24102341-24103311
Coord C2 exon
chr1:24103312-24103424
Length
971 bp
Sequences
Splice sites
5' ss Seq
CAGGTGAGC
5' ss Score
9.6
3' ss Seq
TTTTTTTTTTTTTTTGAAAGTGT
3' ss Score
6.3
Exon sequences
Seq C1 exon
ATGCAAAAGCAGAATATGTTGGCTATGACATCAAAAGACTCACGCAATATGTGGGAGGAAGAACTGAAGTCAAGAGCCCACCTTGAAGATCGTCTTGCTCAACTTGATAGGGAAAAGGCTGAGCTCTTGGAACAG
Seq A exon
GTGAGCCCAGAAAACAGTCCCTAACACCTAGGCAATACCAAGAGTGGCACTGACATTTTCTTGAGTTCTTACAAACTCAGCTTTTTGTGTCCCTGCCGCTCAGGCCCCTGAGTACCTTGTGATTTGGGAGTCGTGAAGGAATTGAATAAAAACCAACAGGGTGTATCTCTGTAAATGCTGGAGTTGTCCTGTCAGGAAGACAGTGTGGTTTGATATCAGCTGAGCACATGGAGCAAGGCTGCAGTTCCTGAGTTCTTTATTTAGTTTCCTTCTGGTTGTTGTTGAACCCCATGATTTCTGGGCAGGGTTAGAACACCCCTTATTTTCAGTGCAGTGTATGGAGGAACTACTGCATGTTTTCAGAACGTCAGGAGCTTAAAACCCTTGTAGAATAAATAAGGTGCAAGTGCAAACTACAAAACTAGTTGTCAGCTCTCCTCTGGTTTGTCTCAGAAAACACCATGAGGAACAGCACCTGAATTAGTAAACACCCACAAACAAGATGTGGAGGTAATGACTGAGGAAACACTGATGAATTCCAGAAGAGCAGACTTTCACAAGAGCCTGCTGGTCATTGGAGATTCCATGAATGCTCTAGAGTGTGCGGTGTTCTCTGGGGCTGTGGCTATCTAAACAAGCTGACCTACTAGTAGAGGAACTGTGGAAGCTGTTCTCTAGCATCTTTTTTCCAGCTTTTTGGGACAAAGCCCAGTAAGAGGGAGGAGTGGCATTTCCTTCAGCAGGGGCATCAGTTGGTATCCCTAGGTATTGTCCTGTTTGTGTGAAACCTGAAGTGATTAAATGTTCACAAGAACCCTGTGCCCCAGTGTTCTGCTGAACTTGGCAAAGGGATAGATATGTGCTATCTGCAGTTGCTACGTGTACTGTCCCATGCTGAGTGTGTCATGTTTTTTTGTTTGTTTGGGGATTTTTTTGTTTTGTTTTGTTTTGTTTTTTTTTTTTTTTGAAAG
Seq C2 exon
TGTGAGAGTGAAAGAAAGAAAGTGAAGAAGCTGGTAGAGTTGAAACGACCAGTTGAAGCACGTCTTGACCAGGAAATGAAAAGAAATATTGAACTGCAGAAAGAATGTCACAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSGALG00000009104:ENSGALT00000014827:26
Average complexity
IR
Mappability confidence:
NA
Protein Impact
ORF disruption upon sequence inclusion
No structure available
Features
Disorder rate (Iupred):
C1=NA A=NA C2=NA
Domain overlap (PFAM):
C1:
NA
A:
NA
C2:
NA
Main Inclusion Isoform:
NA
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Other assemblies
Conservation
Human
(hg38)
No conservation detected
Mouse
(mm10)
No conservation detected
Rat
(rn6)
No conservation detected
Cow
(bosTau6)
No conservation detected
Zebrafish
(danRer10)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
TGCAAAAGCAGAATATGTTGGCT
R:
TGTGACATTCTTTCTGCAGTTCA
Band lengths:
246-1217
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]