GgaINT0109016 @ galGal3
Intron Retention
Description
NA
Coordinates
chr1:26124080-26129889:+
Coord C1 exon
chr1:26124080-26124232
Coord A exon
chr1:26124233-26129776
Coord C2 exon
chr1:26129777-26129889
Length
5544 bp
Sequences
Splice sites
5' ss Seq
AAGGTACAG
5' ss Score
8.04
3' ss Seq
TTTTTTTTTTTTTTTGAAAGTGT
3' ss Score
6.3
Exon sequences
Seq C1 exon
GGTATGGTCAGACAGCTACAGCAGGAGCTTGCTGATGCTCTTAAAAAGCAGTCTATGTCAGAAGCTTCCCTTGAAGTTACTACACGCTACCGCAGTGACCTTGAGGAAGACAAATTGCGCTTGCAAAAGGAATTGGACAGGGTTAAAACCAAG
Seq A exon
GTACAGAGAGGCTGTAACTTATAAATCTGAGAGTGTTTTTTCCCTGTTTCTGGTGAAGAAGAGAAAAATAGTGTTCTGAGAGCAAGTACCAGTAAGAGCTAAGGAGGTTAGCAGTGATACCCTGTCATAATTCAGGAAGCCGGTGAAATCTTTGCCAGCTGGCCTCCTCCTCTGTAGTGAAAGATAAGTGTTACTGGAATCATCAAAACTAGCTTCTTTTGCAAGTAGGAGACATTCTTCAGCCCCACAGCTAAAGCTCTTCTTGAAGCTCCAGGATATTGCAGTAGTGTTCTTTCTTTTCCCAACTTGCTTCCCTCTCCTGGGGTCAAACACAAGTAAGAATTCATTTGTGGATGGGATGTTTGCACTCTCTGAAGCAACATCACACGAGTGCTCTGAATTTACAAATTATTTTTCTGTGTCTTATAATGTTGGTTGTAGACACTGTAAGCAGGTCTTTACCTCCTTAGTCTTCTCAACTTGCCCCTTGTCATCTGTGATCACAGTCATGCCTGTGCCCAACCAGAGCAGAGATTTCAGAGTATAGGCAAATATTGTCCTCCAATCCTAGAAATAAATTCAAGGGTATAGGTTGAATGACATGTATATGGATTGCATTGTTCTATGCGCTTGGTGTCCATGATTGGGTGGTCTTTGATGTGAGGTCACTATATCTTTTCCTGGAGAAGATCTGTATTTGACAAGCCACTTTGCTAAATAACCTGGTGTCTCTGCAGGTTATTGCATTTGGTTTGGCCAGGTATGGTGTCCGATTTCTGAGAAACGGTAGAAATACTGGACGGCTGAATTTGAGTTTTTCTTTTTTGCTCTCTATGAGAGTTGTGGGTTTTTTTTTCTGAAACATCTATCATCAGAATCTACTACTGAGATGTGAAATCACTTTAGGAAAAGGATGATTTTTTTAATTAATATTTTCAATAGAATAGCAAGTAGCTTCAGGGTGTCACAAGTCACTGAGAAGGTAGGATTGGCAGTGTCAATGCTCATAATGGTGTTATAGAAAATCCTTTGTACAGCTGGGAGAGGCCAGTATCACAGATGATGAAATATCACCTGTTATTGTTCTTTTGCTAAGAGAAATGAGAGTTTGAATGAATTGGAAATGATTACAATACTTTGGGTAGAGGGTGTGTGTAGGTACGTGCAATATTCAAATTCTTCAGCACCCACTGAGTTCTCTATAGAGAAACTAACTGGATGCTGAGGATTCTCAATGCTATTTTACAGTTACAGGAATCTGAAGAACAGCGTATTCAGTCTGAGCATTGTGTTCATGACTTGAAGACTGTCCTAGATAATAAGGAAAGAGAAGTATCAGCTTCTTCCCAGAAACTGCAAGACCTTCTGTTAGCAACTTCTGGAACCAATACTACTATAAAACAACTGGAAGAACATGTACAACGGTAAGAAAATAGCAGAATGAAGCAAGGTTTTGCTTTCTGGGATTATTTGAAAACATCAGGATTGCCTTGTTTCATCATCATGGTAATACATTATTTTGAAAGAAGCTCTTGCTTTAAATTGCGTTATTTCACACTGTTCTTTTACAATTTGTGCTATTACGGGTTTCTCTAATAAGGTCTGTGTTTTTCTTTAAGACTTGAAATTGAAAATGCCAGATTGGAAGCTGCAGCCAAACAACAAACCAATAGAATTGAAGCTCTTCAGAAGGACCTGCAAGCCTCAACCTCAGTAAGCCAGTCATAAACTTCCCTTTTATATTTTTTTATTTTTTTGTGAGCCTCTGAGCCTAGTTAGATATTTTTCAAGGGGAAAGTTATGTGATTTTTCTGGGGAGTTGAGTCACCTGAGTTGTGCTGTGACTGTAGGGTACTCTGAAAATCCTGCTGGTCCATTCTCCAGTTCTCTGGTTTTGAGCGTTTTCCCGTAATAATATATCAAGTTCTTAACACTATTCAAGTACTTAATACTATATATGGTGAGGTTTTGACACTAGTGTGCTGGTTTAAATATTTTATTCTTTATACCAGTCATGATGTTAGATGACAGACACATATTGGAATGTGTATCTTGAAAGGCATTCTGCAGGTTTCTTTAGGGAAATGTCACATGTGTGACGGTTCCAAGACCTTCATGCCAGAGGCTTGGCTGACATCAGGCTGGGGCAAGAGTTATATTCCCCAGAGATTTTGCTGTGTGGAATTGCTTTTCCATTGGCTGCTTGATGTGTATTTGTTTCCATGAAATGGTAAAGAGGAATCCCCGTGGTGTTATTTGCAGAACTTGGTGAAAGGCTTGCAATTTCCCCTTGTTTGGTGGTATTAGCATAAATAAGGTGATTGGTATTACCATAAATAAGGTGATTTCACCTCTAGTTTATATGAGGCAAATTATTTTTGTATTCTAAACTATGAACTGGGGGCCTTGTTATACCCGTGGTTGTTAATTAATGTTGAAGAGCTTCTGAAAATAACTATACATGAAAGTTGAACTTTGTGCTGTAGTGACACTGGTAGAAGAAGAGAGAAATGCTTACTCTTCCCCCTTGGTTAAGACAGCATGGTTTTCAAATGTATGGTGAACGGGAGAAGCTCCTTTGTATGTTCATTGTTAGAGTTAGGGTAGTATGGTTAGGTTGCGGTTGGACTTGATGATCTTGAAGGTCTTTTTCAACCTGAACAATTCTATGATTCTGTGATTGAAGATTATTTGTATTCCACATAGTTCTCTCCTTGAAGCCAAATGGCAGAGGTGATGTTTGCTAACAGTTTTATCATAGCATCAGACTAAGGTATTTCTCATGACTAATGGTGAGGGTAAATATGAAAAGAATAAAGAGTTGGAAAGATATGTGTAAAACTTATTTTTATAATGAAATGTGAACTTCAGACTAGAAAGACAGTGTCTTCTTTCTTCTTTTGATGCTTTCTTAGGTTCATAATCGACTAGAGGACTTGATAACTGGTTTACGGACAGCGCAGACAGCTGCAGAAGAATACCAACATCAGCAGGTACCTCAATGACTTCTGCAAATGACTGGTTTAGTCTTTTTATTTCTTGTGTGCGGGCAATTGATTGGAAAGATTTGGTGTGCTATAAGGTACAAATAAACTGACAAAATAGGTTTCAGGAAAAGGCACCTTCAAGGGTAAAGGTTGTAAATTTCCACATTTCCCTGCTGCCTTTTCTATCTTTGCAGTGATATGCAGATATTTGTGTTCATCAGCATTATTCTTTTGATGGATAGGATGGATGATGTCAGCAGGAGGGAGATGTATGGTTGAAAGCTGAGAGGGGAAACTGGACCTGAAAAATCTATTTCATCTTCAGAGCTTTGTCATAGTTTCCACCTGAGCTCATTAGATTCTTTTCCCATTTGTGAATATGTGTTGGTACTGTACTGCTGCACAGGGGGCTGAGGTAAGGAAAGAGCAAATAGGTGAGGTGATGCTCTGCAGTCAGTGGCAGGCAACTGGAAAGTAGCTGGTGTATGTGCATGGCCTAGCATCTTGTGTAACCTTGGAATATTCTTGAATTAGTTTGCTGTTGGAAAATTAAGCTGCTGTAGGGAGAGTAAGAAGGATCTAGTAGAAGGGAAAAGCTGTTGATTTTTTTTCCTGGGGAAAGCCCCAGAAAAGTCTGAGTTCTTTTCCAGGTTCCTTTTCAGTTGTCTTATTTTGGTGGCATACCAATTGAAAGCAGTTTTTTTAATGTTTTTAATGTTTTTAACAGTTCTGTATTTTACCTATACATTGTCACATACTGAGAACCAACATTTAACCTATTCTGTAAGGACACATGAGAAAGTTTTACAAGTTTGTTGTATAAGCCTTTAAGCTAAGGTTTTTATATCCTTCTGTAGGTCAGGGGACATTTTTTTTTTTTTCTTAAAATGTACTACTCAAAGCATCTAGACAACTTTCATTCTTTACAAAGTGAACTGAATAAGCAAACTTGTTTCCACACAGATGCATCTGTGATGCAAAGCTTTGTTCCTTTGGGTAAAAGTATAAGTAATGTTGCTGATCTGAAAACATTTTCTTGCTCTGAGAAGATCTGCAGTTATTACACAGTCAGTGAGTGTAGGGAATTTTCTGTGGTGGGCACTGGATGAATTATAAATGTAGTTATTTTTGTATCATTATGAAATCTGGAGAATTTTATGAAGAAAGCTGTGGGGTAATTTTGTATGTGTGTCATCTTATCCCCAAAAGATGTAACCTCATTTTATCATATATAGAACTTTCACTCTTTCCACTAGCATTAAGTCCTATTCTTGATGGTGCCTCTCAAGCCATGTTTTATACACTCTGTATAACATTCACTACAGATCTTTAGTGGTGAGTGTTTAGCCCTGCCTCCATTTGAGTTACTAGTTTATAATGCAGTTCGTGTGCAGTGTTGTGTTGTCTCTCTGGTTATCTTGGCATTCCCTTTGCCATTGTTGTTTCCATAGATGCAAAAGCAGAATATGTTGGCTATGACATCAAAAGACTCACGCAATATGTGGGAGGAAGAACTGAAGTCAAGAGCCCACCTTGAAGATCGTCTTGCTCAACTTGATAGGGAAAAGGCTGAGCTCTTGGAACAGGTGAGCCCAGAAAACAGTCCCTAACACCTAGGCAATACCAAGAGTGGCACTGACATTTTCTTGAGTTCTTACAAACTCAGCTTTTTGTGTCCCTGCCGCTCAGGCCCCTGAGTACCTTGTGATTTGGGAGTCGTGAAGGAATTGAATAAAAACCAACAGGGTGTATCTCTGTAAATGCTGGAGTTGTCCTGTCAGGAAGACAGTGTGGTTTGATATCAGCTGAGCACATGGAGCAAGGCTGCAGTTCCTGAGTTCTTTATTTAGTTTCCTTCTGGTTGTTGTTGAACCCCATGATTTCTGGGCAGGGTTAGAACACCCCTTATTTTCAGTGCAGTGTATGGAGGAACTACTGCATGTTTTCAGAACGTCAGGAGCTTAAAACCCTTGTAGAATAAATAAGGTGCAAGTGCAAACTACAAAACTAGTTGTCAGCTCTCCTCTGGTTTGTCTCAGAAAACACCATGAGGAACAGCACCTGAATTAGTAAACACCCACAAACAAGATGTGGAGGTAATGACTGAGGAAACACTGATGAATTCCAGAAGAGCAGACTTTCACAAGAGCCTGCTGGTCATTGGAGATTCCATGAATGCTCTAGAGTGTGCGGTGTTCTCTGGGGCTGTGGCTATCTAAACAAGCTGACCTACTAGTAGAGGAACTGTGGAAGCTGTTCTCTAGCATCTTTTTTCCAGCTTTTTGGGACAAAGCCCAGTAAGAGGGAGGAGTGGCATTTCCTTCAGCAGGGGCATCAGTTGGTATCCCTAGGTATTGTCCTGTTTGTGTGAAACCTGAAGTGATTAAATGTTCACAAGAACCCTGTGCCCCAGTGTTCTGCTGAACTTGGCAAAGGGATAGATATGTGCTATCTGCAGTTGCTACGTGTACTGTCCCATGCTGAGTGTGTCATGTTTTTTTGTTTGTTTGGGGATTTTTTTGTTTTGTTTTGTTTTGTTTTTTTTTTTTTTTGAAAG
Seq C2 exon
TGTGAGAGTGAAAGAAAGAAAGTGAAGAAGCTGGTAGAGTTGAAACGACCAGTTGAAGCACGTCTTGACCAGGAAATGAAAAGAAATATTGAACTGCAGAAAGAATGTCACAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSGALG00000009104:ENSGALT00000014827:13
Average complexity
IR
Mappability confidence:
NA
Protein Impact
ORF disruption upon sequence inclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.020 A=NA C2=0.026
Domain overlap (PFAM):
C1:
NO
A:
NA
C2:
NO
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Associated events
Other assemblies
Conservation
Rat
(rn6)
No conservation detected
Zebrafish
(danRer10)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
No suggested primer sequences
R:
No suggested primer sequences
Band lengths:
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]