BtaINT0018330 @ bosTau6
Intron Retention
Gene
ENSBTAG00000008288 | ANKRD26
Description
Bos taurus ankyrin repeat domain 26 (ANKRD26), mRNA. [Source:RefSeq mRNA;Acc:NM_001113767]
Coordinates
chr13:17919494-17920666:-
Coord C1 exon
chr13:17920573-17920666
Coord A exon
chr13:17919607-17920572
Coord C2 exon
chr13:17919494-17919606
Length
966 bp
Sequences
Splice sites
5' ss Seq
TCGGTAAGT
5' ss Score
11.78
3' ss Seq
TTAAATTGTTTTTTTCTAAGTCT
3' ss Score
4.74
Exon sequences
Seq C1 exon
GCTTGAAATTGAAAATGCCGAGTTACAAACTACAGTCAAAAAGCAAGCGGGCAAAATTGAACAGCTTCAGAAAAACCTGTTAAGTACAAGATCG
Seq A exon
GTAAGTCAACCTCTTGATTTCTGTCATACTGAGAAAGGATTTTAATTTTTTTACCAGTAATATATAAGAATATTTTGGACAATGTGAAAAGTCTCATTGATTAGCTTATTGTATTTTTATTGATACTGCTTGCTACTAGTACTGTGATTCCTCTATAGAAGAAGTCGACTGAATTCATAAAATTAATGATTTTTATAGTAAGATTTTAATTTAAAAAATTGTGACAGTCCAAAAGCAATATTTTATATAAACCACATTTTGTTTGTTCATTCATCTGTCAATGAAATTCCACCTTCTGACTATTGTTAATAATGCTGCTTTGAACACTGGTACACAAACATCTATTTGAGTCCAGAAATTTGAGTAATTATTTGATTGAGAATTTTGAGTTTCTTTTGTAATCCAGATCTTTCTGTGAGATGTTTGATAATGAATCATTTTAAATATTGTAGTTTGTTCTCTTCATTAAGAATGAATACTATGTCTGTATAGAACCATTTTTTTGAACGAGTGTATTTTTCATTTGTTGGATTTTTTTTTAAGAGATGGGGGTTGCATGGGAATTTTTCAAAGATTATTTTAGTAAGGTGTGACTTAACAAAACCTGGAATATCTTGCACCATTGATGAAAATTATTTTAGAGCTTCTCTAGAAAGTAAAATGTAAATATAGGCAGTCTTTAAAAAACTTTCATTAACATTTAGTATTTTATGTGTAAAAGTCTCTATTTTTAACAAATAAATGTTGGCAATTTAAATTCCAGAAAAATGATGAAATGAAAAATCATTTTAAGTTGTTTTAAGAAAAGTCATCAATTTTGAAATCTGTTATTGGCATCAATCAGGTTTAAAAACTGTGTTTACTATAAATTCATATTAACTTGTGAACTCATAAGAAATAATATTTTTAAAGAATAAGTCTCTCTAGTTGTTTAAAAATAATTTTCTTAAATTGTTTTTTTCTAAG
Seq C2 exon
TCTGAGGATGAAAAGGAACAATTAAAGAAATACATTGAATTAAAACAATCTCTGGAAAATAGCTTGGACCAAGAAAAGAAGAAAAACAGTGAGTTAGAAAAAGAGATTACTGG
VastDB Features
Vast-tools module Information
Secondary ID
ENSBTAG00000008288:ENSBTAT00000022622:27
Average complexity
IR
Mappability confidence:
NA
Protein Impact
ORF disruption upon sequence inclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.344 A=NA C2=0.263
Domain overlap (PFAM):
C1:
NO
A:
NA
C2:
NO
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Zebrafish
(danRer10)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
GCTTGAAATTGAAAATGCCGAGT
R:
ACTGTTTTTCTTCTTTTCTTGGTCCA
Band lengths:
184-1150
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Pre-implantation embryo development