RnoINT0017759 @ rn6
Intron Retention
Gene
ENSRNOG00000006717 | Ankrd26
Description
ankyrin repeat domain 26 [Source:RGD Symbol;Acc:1310736]
Coordinates
chr4:150560519-150562698:-
Coord C1 exon
chr4:150562605-150562698
Coord A exon
chr4:150560632-150562604
Coord C2 exon
chr4:150560519-150560631
Length
1973 bp
Sequences
Splice sites
5' ss Seq
TTGGTAAGT
5' ss Score
10.47
3' ss Seq
CTTTAAAATTTTTTTCAAAGTCT
3' ss Score
4.64
Exon sequences
Seq C1 exon
GCTTGAACTTGAAAATTCCAAGTTCAAAATTACAATAAAAACGCAATCAGAGGAAATTGAACAACTTCAGGAAAACCTGTCAAATGGGAATTTG
Seq A exon
GTAAGTGGTCCTCGTCCTGGATTCTTTCATGCTGAGAGGGAGGGTCTCTGCTCTGTGGGAACACAGTGGGCAGTCCTCTGCAGTGGTGCTGTGGGAACACAGTGGGCAGTCCTCTGCAGTGGTGCTGTGGGAACACAGTGGGCAGTCCTCTGCAGTGGTGCTGTGGGAGCACAGTGGGCAGTCCTCTGCAGTGGTGCTGTGGGAACACAGTGGGCAGTCCTCTGCAGTGGTGCTGTGGGAACACAGTGGGCAGTCCTCTGCAGTGGTGCTGTGGGAGCACAGTGGGCAGTCCTCTGCAGTGGTGCTGTGGGAGCACAGTGGGCAGTCCTCTGCAGTGGTGCTGTGGGAGCATGGAGGGCAGATTACAAAGTCTTGGTGTTGTTTCTGTTCACACTGCTTGTTCCTCACAGTGTAAATCCATTCTGCAAAGAAGTTGGCTGAGTTCATAAATTAATGATTTCAGCCCTAACATTTCGATAAAAGCGTTTCAATAAAAGTGCTGTATACACACCACATCCTGTTTATGATCTGTGCACTGGTGGACCTGTGAGTTAGCTCTGTTTCTGGGTAAAGAGACGTAACATTGCTATGGATGTCAGACAACATTGCCCCACAAGAGCTTTACATTAAATCTTTAAATTCTAAGAAATTTAAGTTATTTGATCTAGACTTCTCAACTTTTCTAGTAATCAAAGCCTGTCATTGAGATTTGGAGAATGAATTACTTAAGAGTTTTTATTCATCCAGAATAGATAACAGACCGAGATACAAGTGTTCTTCCCTAGGGAACTATGTTTTCTACTTTGAATTAAAAAGAAAAAGAGAAACTAGCTAACACTAGAAAAGGTCACGAGACACATTGGACACCAGTCACAGAGCTGTTCTCACTGCTGACCTAAGCCACCAGAGTTCACTGCGCTCTGTGTGGGCAACACAGTTCTAACAAGACGCCCTGCTGTTGAGTCTGTGAGACTGGCGGAAGATGGCCAGCTGTACGAGTCTTAGAGGAATGTATTAAGAATACAAATCTATCGGTCCCCAGCTCTGGAAAAAAAAGAAAAAAAAAGTTAAAAAAAAAAAAAGAATACAAATCTAAATTTATGATTTGTGTCTCATTTTGGCTTGGTCTTTTGAGACAGGGTTTCACTACATAGCTCTAGTTGTCCTAGAACTCAAAATGTACACCAGGCTGGCCTCGGACTCACAGAGATCTGTCTACCTCTGCCTTGCGAGTGCTGAAATTGAAGCACCGTGCCCTGCTCTCCTTCCTTTATTGATCTCCTTTGATGGAAGGAGAGACATGCACATGCCTTGTCCTGGATGTGGAGGGAAACAGAAGACAACACAGGTTGTCGCCTTCCGTCGTGGGATCCAGGAATCAAACTTAATTGGTCAGGATTGGCAGCAAGCAAGTGCTTCAAACTTGTACGCTTATTCCAAAGTGATGGCAGATTTCCTGTAGCATTCTAAGAAAATGATAAGAATTCGGAATTGAAGGCAGAGAATGGCTAAAAGTTAGGGCCACTTAGGCTGCATAGTCATTTCCAAGCAAGGCTCAGGTAACAATTGATCTCTCTGAAAAACTTACAGCAAAGTAAAGCCAAACCAAACCAAACGAACAAAGCCCAAATGCTGGCATGATGGGTCGGGCAGATAAAAGCTCTTACCACCAAACCAACCTAAACTTGATCCCAGGAACCTGTGTGCCGAAAGGAGAGCACGGACTCCTGAAAGCATTCCTCTGACACATGTACACACGCATTCACCTGTACACACGCACATGCATGGACACACGTGCACACACACAAACACTCGGATTCACACATGCACATACAGAGACACACAGACTCACATACACATTTATACAACTCACAGGCATCCACACACTTAACACCCTCAATAGTCATACAAGAGAAACCATTCTTTTAACAAAGTAAAAATAAAAATTATTTTCTTTAAAATTTTTTTCAAAG
Seq C2 exon
TCTGAAGAGGATCAGGAAAAACTGAAGAAGCTTACGGAGTTGAAAGAGTCCCTGGAATATACTTTGGATCAAGAACAGAAGAGAAGCGACGCATTAGAAAAGGAACTGACAGA
VastDB Features
Vast-tools module Information
Secondary ID
ENSRNOG00000006717:ENSRNOT00000073562:27
Average complexity
IR
Mappability confidence:
NA
Protein Impact
ORF disruption upon sequence inclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.406 A=NA C2=0.395
Domain overlap (PFAM):
C1:
NO
A:
NA
C2:
NO
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Chicken
(galGal3)
No conservation detected
Zebrafish
(danRer10)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
GCTTGAACTTGAAAATTCCAAGTT
R:
TCTGTCAGTTCCTTTTCTAATGCGT
Band lengths:
207-2180
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]