GgaINT1001375 @ galGal4
Intron Retention
Description
Uncharacterized protein [Source:UniProtKB/TrEMBL;Acc:E1BZ82]
Coordinates
chr1:24099387-24100760:+
Coord C1 exon
chr1:24099387-24099480
Coord A exon
chr1:24099481-24100682
Coord C2 exon
chr1:24100683-24100760
Length
1202 bp
Sequences
Splice sites
5' ss Seq
TCAGTAAGC
5' ss Score
5.59
3' ss Seq
TTCTTTTGATGCTTTCTTAGGTT
3' ss Score
8.36
Exon sequences
Seq C1 exon
ACTTGAAATTGAAAATGCCAGATTGGAAGCTGCAGCCAAACAACAAACCAATAGAATTGAAGCTCTTCAGAAGGACCTGCAAGCCTCAACCTCA
Seq A exon
GTAAGCCAGTCATAAACTTCCCTTTTATATTTTTTTATTTTTTTGTGAGCCTCTGAGCCTAGTTAGATATTTTTCAAGGGGAAAGTTATGTGATTTTTCTGGGGAGTTGAGTCACCTGAGTTGTGCTGTGACTGTAGGGTACTCTGAAAATCCTGCTGGTCCATTCTCCAGTTCTCTGGTTTTGAGCGTTTTCCCGTAATAATATATCAAGTTCTTAACACTATTCAAGTACTTAATACTATATATGGTGAGGTTTTGACACTAGTGTGCTGGTTTAAATATTTTATTCTTTATACCAGTCATGATGTTAGATGACAGACACATATTGGAATGTGTATCTTGAAAGGCATTCTGCAGGTTTCTTTAGGGAAATGTCACATGTGTGACGGTTCCAAGACCTTCATGCCAGAGGCTTGGCTGACATCAGGCTGGGGCAAGAGTTATATTCCCCAGAGATTTTGCTGTGTGGAATTGCTTTTCCATTGGCTGCTTGATGTGTATTTGTTTCCATGAAATGGTAAAGAGGAATCCCCGTGGTGTTATTTGCAGAACTTGGTGAAAGGCTTGCAATTTCCCCTTGTTTGGTGGTATTAGCATAAATAAGGTGATTGGTATTACCATAAATAAGGTGATTTCACCTCTAGTTTATATGAGGCAAATTATTTTTGTATTCTAAACTATGAACTGGGGGCCTTGTTATACCCGTGGTTGTTAATTAATGTTGAAGAGCTTCTGAAAATAACTATACATGAAAGTTGAACTTTGTGCTGTAGTGACACTGGTAGAAGAAGAGAGAAATGCTTACTCTTCCCCCTTGGTTAAGACAGCATGGTTTTCAAATGTATGGTGAACGGGAGAAGCTCCTTTGTATGTTCATTGTTAGAGTTAGGGTAGTATGGTTAGGTTGCGGTTGGACTTGATGATCTTGAAGGTCTTTTTCAACCTGAACAATTCTATGATTCTGTGATTGAAGATTATTTGTATTCCACATAGTTCTCTCCTTGAAGCCAAATGGCAGAGGTGATGTTTGCTAACAGTTTTATCATAGCATCAGACTAAGGTATTTCTCATGACTAATGGTGAGGGTAAATATGAAAAGAATAAAGAGTTGGAAAGATATGTGTAAAACTTATTTTTATAATGAAATGTGAACTTCAGACTAGAAAGACAGTGTCTTCTTTCTTCTTTTGATGCTTTCTTAG
Seq C2 exon
GTTCATAATCGACTAGAGGACTTGATAACTGGTTTACGGACAGCGCAGACAGCTGCAGAAGAATACCAACATCAGCAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSGALG00000009104:ENSGALT00000014827:24
Average complexity
IR
Mappability confidence:
NA
Protein Impact
ORF disruption upon sequence inclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.469 A=NA C2=NA
Domain overlap (PFAM):
C1:
NO
A:
NA
C2:
NA
Main Inclusion Isoform:
NA
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Associated events
Conservation
Zebrafish
(danRer10)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
No suggested primer sequences
R:
No suggested primer sequences
Band lengths:
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]