GgaINT1030904 @ galGal4
Intron Retention
Gene
NA
Description
NA
Coordinates
chr1:24097615-24099191:+
Coord C1 exon
chr1:24097615-24097767
Coord A exon
chr1:24097768-24099117
Coord C2 exon
chr1:24099118-24099191
Length
1350 bp
Sequences
Splice sites
5' ss Seq
AAGGTACAG
5' ss Score
8.04
3' ss Seq
AAGTATCAGCTTCTTCCCAGAAA
3' ss Score
0.29
Exon sequences
Seq C1 exon
GGTATGGTCAGACAGCTACAGCAGGAGCTTGCTGATGCTCTTAAAAAGCAGTCTATGTCAGAAGCTTCCCTTGAAGTTACTACACGCTACCGCAGTGACCTTGAGGAAGACAAATTGCGCTTGCAAAAGGAATTGGACAGGGTTAAAACCAAG
Seq A exon
GTACAGAGAGGCTGTAACTTATAAATCTGAGAGTGTTTTTTCCCTGTTTCTGGTGAAGAAGAGAAAAATAGTGTTCTGAGAGCAAGTACCAGTAAGAGCTAAGGAGGTTAGCAGTGATACCCTGTCATAATTCAGGAAGCCGGTGAAATCTTTGCCAGCTGGCCTCCTCCTCTGTAGTGAAAGATAAGTGTTACTGGAATCATCAAAACTAGCTTCTTTTGCAAGTAGGAGACATTCTTCAGCCCCACAGCTAAAGCTCTTCTTGAAGCTCCAGGATATTGCAGTAGTGTTCTTTCTTTTCCCAACTTGCTTCCCTCTCCTGGGGTCAAACACAAGTAAGAATTCATTTGTGGATGGGATGTTTGCACTCTCTGAAGCAACATCACACGAGTGCTCTGAATTTACAAATTATTTTTCTGTGTCTTATAATGTTGGTTGTAGACACTGTAAGCAGGTCTTTACCTCCTTAGTCTTCTCAACTTGCCCCTTGTCATCTGTGATCACAGTCATGCCTGTGCCCAACCAGAGCAGAGATTTCAGAGTATAGGCAAATATTGTCCTCCAATCCTAGAAATAAATTCAAGGGTATAGGTTGAATGACATGTATATGGATTGCATTGTTCTATGCGCTTGGTGTCCATGATTGGGTGGTCTTTGATGTGAGGTCACTATATCTTTTCCTGGAGAAGATCTGTATTTGACAAGCCACTTTGCTAAATAACCTGGTGTCTCTGCAGGTTATTGCATTTGGTTTGGCCAGGTATGGTGTCCGATTTCTGAGAAACGGTAGAAATACTGGACGGCTGAATTTGAGTTTTTCTTTTTTGCTCTCTATGAGAGTTGTGGGTTTTTTTTTCTGAAACATCTATCATCAGAATCTACTACTGAGATGTGAAATCACTTTAGGAAAAGGATGATTTTTTTAATTAATATTTTCAATAGAATAGCAAGTAGCTTCAGGGTGTCACAAGTCACTGAGAAGGTAGGATTGGCAGTGTCAATGCTCATAATGGTGTTATAGAAAATCCTTTGTACAGCTGGGAGAGGCCAGTATCACAGATGATGAAATATCACCTGTTATTGTTCTTTTGCTAAGAGAAATGAGAGTTTGAATGAATTGGAAATGATTACAATACTTTGGGTAGAGGGTGTGTGTAGGTACGTGCAATATTCAAATTCTTCAGCACCCACTGAGTTCTCTATAGAGAAACTAACTGGATGCTGAGGATTCTCAATGCTATTTTACAGTTACAGGAATCTGAAGAACAGCGTATTCAGTCTGAGCATTGTGTTCATGACTTGAAGACTGTCCTAGATAATAAGGAAAGAGAAGTATCAGCTTCTTCCCAG
Seq C2 exon
AAACTGCAAGACCTTCTGTTAGCAACTTCTGGAACCAATACTACTATAAAACAACTGGAAGAACATGTACAACG
VastDB Features
Vast-tools module Information
Secondary ID
ENSGALG00000009104:ENSGALT00000014827:22
Average complexity
IR
Mappability confidence:
NA
Protein Impact
ORF disruption upon sequence inclusion
No structure available
Features
Disorder rate (Iupred):
C1=NA A=NA C2=NA
Domain overlap (PFAM):
C1:
NA
A:
NA
C2:
NA
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Rat
(rn6)
No conservation detected
Zebrafish
(danRer10)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
GGTCAGACAGCTACAGCAGGA
R:
CGTTGTACATGTTCTTCCAGTTGT
Band lengths:
222-1572
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]