MmuINT0015552 @ mm10
Intron Retention
Gene
ENSMUSG00000007827 | Ankrd26
Description
ankyrin repeat domain 26 [Source:MGI Symbol;Acc:MGI:1917887]
Coordinates
chr6:118518341-118521993:-
Coord C1 exon
chr6:118521841-118521993
Coord A exon
chr6:118518412-118521840
Coord C2 exon
chr6:118518341-118518411
Length
3429 bp
Sequences
Splice sites
5' ss Seq
CAGGTATGT
5' ss Score
9.8
3' ss Seq
TGTTTTATTCTTTATTCCAGTTG
3' ss Score
9
Exon sequences
Seq C1 exon
GTAGTTGTGAGGCAACTCCAGCAAGAATTGGCTGATACCCTAAAAAAGCAGTCGATGTCAGAGGCTTCGCTGGAAGTCTCCTCCCGCTACCGCAGCAATTTAGAAGAAGAGGCGCGAGACTTAAAGAAGAAATTAGGTCAGCTCAGAAGTCAG
Seq A exon
GTATGTATGAATTTGGTATGCCAGCTGCTCGGGATGGTGTCAGCAGACAGCCTTCCTCTGGATTTTCATGTAATCCACCATTACCTTTATGATGAACTTATTTCTTAAATTCCACTTTGATTTTACCATTTTTTTCCTTTGATTTTAAAGAATGCATTTGCTTCTTGTGAGGGAACAGGCTTAAGCATGCCTCCTCGTTCCAGTGGAGGGCAGAGGACAGCTTGTGGGGTCTGTCCTCATCTGCCATCACATGATCTAGAGGTCTGAAAGGTCTGGCTTATGTCATCATTAGCCACAGACACCTTCCACCTCCACAGCCATCTCACCGGCCCCATCTTTTTCTTATAATTTCGTCTTTCTTTAATATATTTATCCTTGTGCAAATTGAGAGCTATATATCGTTCCTCAGAGATTTTTCTATTCCAATTGAGATAAAGTAGGTTAAACTCAGATTCTGTTTATGGAAAGTTCCAGAAAATCTGCCTACTTTTTACCCCCACTTTTATGAGTGGGTACAGTATCTTTGAAACTTATTTAATGAACTTCAAGATAACTTGAACGATACAGAACGGCCATATATGTTGTTCAAAAATGCAGATGTTAGCCAGGTGTGGTAGCACACCTGTAATGTCAGCTATTTGGAGGACTGAGTTTGAGGCTGGCCTGAAAACAAAACAAAAGAGAAAGAGACTGAGGAGTGTGTTCAGGTGCAGGACTCGCCTCGAAAATTGAGTCCTTATGCTCAATCCCTTGGGCCAGAAATAAATCAAAAGCAAATGTTTTAGGATAATTTAAAACCTGTCTCCAAAGCTAGGCATTACTTTGATTTAGAAATAAAATCGTATGGAAATATTCAGATCATATATAGTATTCATATCTAAAACAAAATGAAAGCAGTGTCTGGAGTCTACCATCTGTTTTGTGTGTTTGGTTTAGAATCTCTGTAGCTCCAAACTGGTCTAGAAGTAACAGCATGAAGCAGGCTGTCCTGCAGCTTGCAGCCATCCTCCTGCCTCCTCCTCTCAAGTGCTGGGCTTATAAGCAGGTCCCAGTATGCGTGGCTCGCAAAGTGCAGCAACAGTATTGAGTTACCATTAACATAGAATGCACAGCTCACATTGAAGTAAAAAATCCTCGTCGCGTTGTATTTACAGATACATAGGCGTCAGCACCTTTCGGTGTAGTGAATAAACCCTGCGCCTCTCAGTTGTCACCCTTGTCCCTTTGCCTTTCCCAGACCTACTAATCCTCTTTACGTCTGTATATAATTTCTTGTTTCTGAGCATTTTGTATCATACAATATTTACTCCTTTTGAACGGCTCTGTTCTCAGCACATTGCTGTCAGGCCTCGGTATCTCCCTTTAGCTTCCTGTTGCTGCACCAGGCTGTTGCTCTTCTCCCTTCGTCAGGTGGCGGATGTTAGGCTGCTTACTCCGTGGCTGTTAACGCTGCCTGTGCACTGTCATTTGCAGGGCACTTCGCTGTCTTCCGTGGGGTTTACCGCCTCAGTTACCTAGGCCCCGAGTGCTACCTGCATGGCTTTGCTCATGCCATGTTTTTAGTCTTCTTGGTTTTTATTCATTTTTACCTCGTTTATCCAGAACTGACTCACAGTTAACATTTTCATGAAGCATTCCCTAAATATACGTCACTCTTAACATCCTGATTTTTCCATTACTCTTAAATGGTTTTTGCTTCTTTGGGTGTTATTTGTATGAGAAGAAATCTTACCCTTGAATAAGTTGAAAATGTTTTTGCTTAATAGTCATTAGAATAGAATTAGGTACTTCATACCACTACTTCTTTTGAGACCTTAAGTTGATTAAACTTTTTTTTTTGAGACATGTATCCTAGGATCGCTTCAAACTGTAATATAGCTGAGGATGGCTTTGAACTTCTAACCCTCCTGCCTCTGTCTCCCAGATGCTACAGTTATAGACAAGTCCCATCATGCCTGGTTTATGCCTTGCTGAGGCTCAAACCCAGGGCTTCATGTATACAGCAAGTACTTCACCAACTGAATTTTATGCCTCCCTGGAATAAGGCTCTTACTCTAAAGTACCGTAAGGACTTGCATGTGGAGACAGCAAGCACATAATGTGACAGAGGAGAAATGCTCTGCCAAACATTTTTTTTTCCGCCATGAGAAAAAAAGTCACTGCATTTGCCGCCTTTCATTCTGTGTCCAGAGTTGGGATCTATAAGTCTGTAGGAGGTGCCAGCTGTGAGGCTCTGTCTGCAGCTTTTCTGATCTTCCTACGCAAAACCTTCATGGGCCATTAGGGGCCTGGCTAAAGCAACCCAACACACTTTTGGGAGTGTATTGCTTTAAGGACCTCAGTCCAGCCTCTGGTTGTCTTGCATTCACTGCTGACACCAGGAAACACAGTTTACTGCACTGTGTGATCCTCACCAGCTGAGTGGTGTGGAGAAAAAAGAAGCTAAAAACTGAGCCAGTGGACAAAGCAACTGGTGGCCAGAGAGATTTCCGGGAGCTGCAGGGGGTCCTAGGGATATAGTATGGGCTCCAGTCTTCCCGTTTCCTGCCATACTCAGTGAGATAAGCCAATACAGTTTGCATAACGGATCTTGTCTATGGTTGTCATAGCACCTACCTAACATCTCACTCACTGGATGCTTCAAATATTTTATATTCTAATTAATCATCTCAGTAGTCTATTGGCATGGGTAGGAGCATGTCCCTTTCACAGATGAAGACACTAAGATACACAAAGTTTATTTGCTTAGAATCTATCTAGCAACTGGAGGAGATGGGATTTGGACCCAGTCATTCTGGCTTCCTTGTGGATATACCTCCACTGAAGCTATTTCATAAGGCAACCAACTATCATTAAAATGTTATATTCATCATAGCTGGTAGATCTATGATCAGTTGTCATTAAAATATTATGTTCATCATAACTGGCAGAGCTATGACAATTTATAGATATATAGGTAGATAACACATATGCATAAGAAATTTTAAAATCACACCCGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGGAGAAATTCTCTTTTCTTGGTTCCACCAGTGTAGCTGGTTTGCATATCTGGTTAGTTATAGTTAAGACTTCCCTGCTCTGCTGACTGAGCTAGCCAAGTACTAGTAGACAATGATTTACAAATGGGACTGTCAGTCACAGCAGATATCAGTAAACTTCTGTAAAGGGCTGAGTAATATTTTAGCTTTTGAGAGCATAAGACCCCTTTTGCAACAACTCAGTTAAAACTGCCTTCCCTTCAGAGATGCACATGAACAGCACAGATCACAGGTATCCCTGTGTTCCTAGAAAGTCGTAGCACAGAACAAAGCGTGCAGATTTAGAATAGCTCATTAGTAAAGGTTTGTTTTATTCTTTATTCCAG
Seq C2 exon
TTGCAGGAGGCGCGGGATCAACACAGAGAGGCTGTACACCATGCTGAGAAGATGGAAGACCACCTACAAAA
VastDB Features
Vast-tools module Information
Secondary ID
ENSMUSG00000007827:ENSMUST00000112830:25
Average complexity
IR
Mappability confidence:
NA
Protein Impact
ORF disruption upon sequence inclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.412 A=NA C2=0.958
Domain overlap (PFAM):
C1:
NO
A:
NA
C2:
NO
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Other assemblies
Conservation
Zebrafish
(danRer10)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
No suggested primer sequences
R:
No suggested primer sequences
Band lengths:
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Pre-implantation embryo development
- Ribosome-engaged transcriptomes of neuronal types
- Neural differentiation time course
- Muscular differentiation time course
- Spermatogenesis cell types
- Reprogramming of fibroblasts to iPSCs
- Hematopoietic precursors and cell types