GgaINT0109721 @ galGal4
Intron Retention
Gene
ENSGALG00000013117 | PIK3C2G
Description
phosphatidylinositol-4-phosphate 3-kinase, catalytic subunit type 2 gamma [Source:HGNC Symbol;Acc:HGNC:8973]
Coordinates
chr1:64181551-64185067:+
Coord C1 exon
chr1:64181551-64181746
Coord A exon
chr1:64181747-64184944
Coord C2 exon
chr1:64184945-64185067
Length
3198 bp
Sequences
Splice sites
5' ss Seq
CAGGTAGGA
5' ss Score
9.79
3' ss Seq
TCCTTTTTTTTCCCTTATAGATA
3' ss Score
12.22
Exon sequences
Seq C1 exon
CATTAACGGAAGCTGCTGTGACAGAGCTCTCCATGGCCATCTCTCATCTCATCCATGTGTACAGCAGCAGCTTTGATACAGATTTCCAGGTTGCCAACATACCTAGAAGCCCTTCTCGTGCAGACATCAGCCTTGATTCCCAGCTCAGCTTCACTGTCTATGCTGCTCATAACATTCCTGAAGCCTGGGTGAACAG
Seq A exon
GTAGGAGAAGATCCAACAACAGTTCACAAGAAAGGATATGCTGCCTCATCTCTCACTATCTTGTATTTTTCACAGGTACTAGCTAACCTCTGTTGCTTTGGCAATGCTTCAGTAGTAATGTTAGAGGTTGAGTGAGTGCATCTCCACCGTTTTTATAGCATAAAGAACGCTTCTGTAAGCTGATTAACTAGAAGTCTTCCATATTTTGTTCAGGAGAATCAAAGAGGACTTAGCTGGTTACCCCAACCAATATGGATGTACGGTAACAAGCAAGTTCATAGTGTTGAACTTGATGGGTATGTGAACAAACGCATGTGTGTCTGACTTGCTCAGAGAGGCAGAGAAAAGTGTTTGTACTTCATGCCAGGAGTTTGGATTGGAGCTTTCTATATGGCCTTCAAATAAATGCCCACTTTTCCCACTGTAAAACTGGTGTTCTCCTTTTACCACTCCAGTGCAATCAGATATGACTGCAATCTGGTAGTACTATTTTTATGAGTGAAAATGCTATTCTACAAGTGTTTTGTTAATATAATCCCTTTGCTTCCCCTCCACCTTGATTTTCAAATGACCGATTAAAAAGCAGTTGGATCATTTGCATTAGGCTGTGAACATGAAAGTGTACTACAACATTAACTGTAATTAGCAATTTAATAAAAATCTGAGAGATTTACATTAGTTGAGGTAATAAATGGAAAACTATAATCGCTATCCTGATATTGCAGATGGTTATACCATTCCCACTGCATTTTGTTTTACCAGTGAAATGTGAAATTACATATGGCCTAAAATGCCACTGATGACTTGAACACTATGTTCAAGCATGTGAAAATGAGGATCTCTCTTCCTCCTTAACCTCCTCTTCCAATCTTTCTAATACTTGTAACTAGCATGAATTTCTTAACATAGACTGCAGTCCATTTTGCCTACTTTCCTCAGATACTTTTACTAACTTCATTCATAGCTACATTCCTCCTCCATATTTTCTACATTGCGTGATTGTATGCTGGCTTTGTCCCAGCATACATTTCCAGAAGGCCAAATTTTATTATCTTGGTGCTGTTCATAACATGTATTTTATTATCTTGGTGCTGTATATCATAACATTATATATGTTCATAACGTATATATACTGTATATATATATATAATAAGCATATATATATATATAGTATGAATTTAAGTGCTCCAAAAATAATGCCTCCTATTTTATTATGTTAGCCCAGAACATCAGAGGTGGATATTGGTGGCATGGTAGTAGAGGCTGAACCTTCTCACCAATATTCTATTACATTTTGTTGTTCTGTGACAGTTGGCAGCAGAAGGGCAGTCTGACATGGAAGTGTGTATGAAGCAAACATGTGTCATTGAATTTCTCTATGTGGAAAAAATAGCACTCACTGACATTCATTGACACTTGCTGAATATTTGTGGAGGCCAAATAGTGGATATGAGCACAGTGAGGCTATGGGTGGTATTTCTCTTGTTCATCTCTGGAACAAATGCATAGCTAATAGTGGTGACTATGTTGATTTTTTTATTATTATTTTATTTTTTGGTAACTGAGAAAGTGCTCTATCAAGTAGCATTATTGTGCTCTTTGTACCTGTTGTTGTTTCCATGGAAATAAATAGGAGGCATTACATTTAGAGCAAGCTATGTATGTTAGAATTCTGACATCTCTTACATCTTTTCTCCTTGTTTCTCCATACATACAAGCTTGTGATAAATTATCTTTTTTTCTAATCACTGGGATAAGAGGGAGGGTCTTGTGTTTTACTGCATCATTTTAGTGTTTCACCAAATCCCTCTGAAGTTCGTTTTTGTAGATTGGCACTTCATCAATTTTTATATTCATGCTTACCATTTCTCATTTCAGTCTTCCCGTCTTCATTAAAAAGCTAGTTGGAGACCTTATAAATTGCAAAACCAATTACCTTTCCTTACTGTATTTTTTGTTCCTGGTTTCTTTTATCACTTTGTCGTTTTGGCTCATATAGGTCCCTATCAGATATTCCCTACTTGATGCTAATGACATAATGTTGCTAGCACTGTTTTGCTGCATTTGTTTCTAGACCCCTCAAATTCATATTGCTGTCTATATCAAGATGATATAAATTTATCTTTGGGACAAGACTCGGTTTCTCTGCATTTGAATTCATAGGGAGGGAGGATGCCTAGGCAAAATATTGTATGGAGAAGTATAATGTGTTGAAATGTGAATACTCTGAAATTAACATTGTGTAAGCATTAATCTTTTTAGGATTAGTGTTTATGGCATAATAATCAGGGATATATCAGGGATTAAGCAACACTTAATCACTTTATTGTATTAAAATCTATTATTTCCTTCACTATACTCCAATTCTTTGTAGTGTTTGGACTCTAGAGAAAAGATGCCATATTTAAGAGCTCAAGCATTTCCTACACTAGTAAGGTAATATTTTCTTTCTTTGCATAGATACCTCAAAGGAACTACAGATTGTTAAAGAAAAAGAAGAAAGAGAAAAGGCACATCTGCTACAATAATTATAACAATTACTACAGTGTTCTGGAAAAGATCAGCAATGATGCTTGTAAATAAAGCTAAGCCAAGCACTGTTAGTCTGCAAATACTTTAGACTTGCTTTCATCATTCCTATACAGAACATGGTCTACAGCATGGGTATGGCAATTTTCCATAGGAAGATCTGGAAGTTACAAGATGAATTAAGAACATGAAACAAACAGATAGTTGGAGACCTGAATTACACTAGTCAGACAAGTATGTGACAAATGCCAACACAAATGTCTGTAACGCATCTGCTATAATGAGCATGTAGATTCCTTGAAGTATTATCCTTTGGGGTTTTTTTTGTTTTGTTTTGTTTTGTTTGTTGGTTTGTTTTTTTTACAGATTGGGAAAAGTATGAGTGAAGTTTCACTAATGACTGAAGTTACATGATGAGAAAGTTGCAACACCTTGCACCTTCCACCTAAACTTCCATTGACTGCCACAGGGAAAAATAAACAAGGATTACATATCTTAAGCACTATCTTGAACTCTTTTTTTAAATTTAAACATTAATATGTGATTGGTTATTTTAATTCTTTTTGCATGTAAGAATGGATCTTCACAAGTTTCCGAATGGTTAACCCTGAATTTACTGTGCTGGAAATTGCATTGTAATTATTTTTTTTCCTTTTTTTTCCCTTATAG
Seq C2 exon
ATACAAACTTTTTTCTTTTTCCTGTTTGCTAACCTATGCTGGGAAGACAATATGTCAAGTGAAGATTTGCAAAAATATACCTGTTAGAAAATCCTTCTTTTTCTTGACAGACTGGAATGAGAA
VastDB Features
Vast-tools module Information
Secondary ID
ENSGALG00000013117:ENSGALT00000021411:10
Average complexity
IR
Mappability confidence:
NA
Protein Impact
ORF disruption upon sequence inclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=NA C2=0.000
Domain overlap (PFAM):
C1:
PF0079219=PI3K_C2=PU(0.9=1.5)
A:
NA
C2:
PF0079219=PI3K_C2=PU(36.9=97.6)
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Other assemblies
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
No suggested primer sequences
R:
No suggested primer sequences
Band lengths:
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]