GgaINT0110209 @ galGal4
Intron Retention
Gene
ENSGALG00000000750 | CAPN5
Description
calpain 5 [Source:HGNC Symbol;Acc:HGNC:1482]
Coordinates
chr1:192459891-192462527:-
Coord C1 exon
chr1:192462406-192462527
Coord A exon
chr1:192460028-192462405
Coord C2 exon
chr1:192459891-192460027
Length
2378 bp
Sequences
Splice sites
5' ss Seq
GAGGTAATG
5' ss Score
8.73
3' ss Seq
ATACTTCTTTATCTCCCCAGGAG
3' ss Score
9.59
Exon sequences
Seq C1 exon
AGAGCTGACGCTGGATGAGCCACCACACACCTGCTGGAGTGGGATGTGCGGGTACCCTCAAGTGGTGTCCCAGATCCACGTCCTCACCGCAGCTGGCCTCAAGAATCAGGACTCCCAAGGAG
Seq A exon
GTAATGGCCTTTCTCTGCCCGTTGTGCAGTCCCAGAAGGACTGGGAGTTGGTTGTTTCAAGGGGGAGAAGAGAGAGGTGGTTTCATGAAGTGAGAGCTTGTTCTCTTATTTCTGTAATGTTCCTTATGTCCTCAGATAGTTTTTCAATGGAAGCATCTGGTTCAAACGCCAGAGGAGGAGAAAGTCCGTGGAAAACCTTGCTGTGCACATGAACTGCTGTTAAATTCAAGCTATCGGCAAGGATTCTTGGGAGATCCTCCCAGAACCTCCCCAGGGCCCTTGGCAGAGGTCCTGTACTCTTCCAGGCTTTCCTCCCAGGAGTGAGCAGCTAAAGTTTAGGAATCATATTCAAAGGCCTTTTAGTAGGAAGGACAGATAAGCAGTGGTCAATGTTTTGGGGTAGTCTTCATGTTATTTATCACCTACCACCCAGGGAGTCTTCCTATCATGTGTACATCATGTGTATCATGTGTACTATCATGTGTACTCAGGGGGAGAGTTTTGCCCTAAGCAGGTTGTTTTTTTCCTCAGGTTACTCACAATACTCAATGTGCCTGTAGCAGTGCAGCAGTGTAGCCGACAGTTTCTGAACTGTTCACAAAAACACGACCTTTTCTTCCATGGGTGTATGTGGATTCTGGAGCCATAACATATTTTTTTTCAGCAAGATCTCCCTGGGAATAGTTTTTCCCAGCTGTGTTCCAGCTGTTCAGTTCCCACCACCATCAGCCTGCTTATTCAGTGGTTTCCAGTGCAATGGTATCTCTCGCATCTCCCAGCCTAGTTCCCCCACACCGCTTTAGAAACAGTGATTTACAAACTGGAATTTGGCTCCTGCTATGGAATATGAAGATTTTATGAGACATCCCAAAAGAAGAGACTGGTTTGGAAAAACAGCTGTGAAACAAAGCAGCTGTGTTTTGCTGGGGGACCTGGATCCTTGTACACAACAAGGTAGTGAGGAGGTGGTCTGGCAAACAAAAAGGTGGTCTTAAATCCTGGCCCTCAGGAGGGGGTGGTCCATTTCTCCTCATTCCCATGTTCCCCTTGGACAAGAGAACACACTTGGTCTGTGTTTCCATTTTTCCAGCCACTAAAATCCATGGCTGGAAAATGCATCTGACAATTACATTTCCAAAGCAGTATCTCATTCTCTACTGAAATTCCCAGAACCTGCACTTGTTTCACAAGGGAAAAACGATATCTAATGAGGGACTCTTTCTCTGTCCTGGAAGCTCGGGTACCATCCATCTATGACATGATAGTCTTTGGACTTGGTAATTTCCCCCTCCATCTTTTTTGCCTGCTTGTTCCCATGATTATCTTGTTCTAGCTGGGATATTGCTACAACCTTCCTTTCCTGCTGACCTTCTGGCTTCCCACTCACTGGCTTTGCCTGCTTCAATCTCTTCTGGATCCCACCCATTTCACCTCTTTGTCCCTCAGTGCCCCATCTTTCTCTTCCCTATGTCTCCTGCTACTACAGATGATCCTTTTCTTTTGTGCCATTTTGATCTTTTCCCTGGAATCTTGCTCACAGCAAATACTTTAATTACCATCTTCACCTTTTAGAAGTATTTTTAGATATATTTTCATTCTGAGGTTCCCTGTTCTGCCACTAGTTCCTGACTAAACATTCCCAGTTCCCAGACCCTTTGTGGATCTCCTAGCTTAGCATAACGTGGCACTTAATTTTGGCTCAGCTTTGTATTGTCTCTCATCACCTTGATAGCCCAACATTTTTCTTAACCCAGCGTTAGCCCTTATACTTAAAATCTCTGCAGCATTTGAGTCTCATTCAGTCTAGGAGAAACACAAGTTGTGCCAAAGATTTATGAATAGAGGTGAAAAGCATATTCTCATGTTGACCTAGTTGGTTCTGACCTGAAAGTAAAACCAAGCCTAGTTCTGGAGTATGAGTGCAGTGGGAGCAAGTTTGTTTTTGCATGCTCTTTCTGTTCTTCTTAGTGTTTCCTTCCACGAAACAAGCTCTGTGAGCTCAGCTCTCTTCTCCATGGCTTTATTTTCACTTACTTTCAGTATATCTTGTAAGGGAGAAGTGAGCACATCACTGACTTCCATGCCCAAAGGCAAGGAGAATTTAGAGTGATAAAGGAGGGCTTAAATAGAATATGAGGTCAAGGAAGATGGCCGTTTCATAGCAGTCCATCACCAGCTCCTTTCTGGATACCATGTCACCTAACAGGGTAAGCCCCAGCCCATCAGCAGAGCTTCATGGATGTGATGCACTCCTTGGCAGATATCCATCTCTTCTATTGGGATTTGGAGGAAAACTGCTGCATGCAGCCTCTGGGAAAGGGCTCTGAGAAATTACAGGAGATGGAAAATAAGGATCGTATACTTCTTTATCTCCCCAG
Seq C2 exon
GAGCTGACCCATATGTGATAATAAAGTGTGAAGGGCAAAAGGTTCGTTCTGCAGTGAAGAAAGACACGGTGTCACCAGAGTTTGATGTGAAGGGCCTCTTCTACCGCAAGAAGCCAGGAAAACCCATCATTGTTCAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSGALG00000000750:ENSGALT00000001093:11
Average complexity
IR
Mappability confidence:
NA
Protein Impact
ORF disruption upon sequence inclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=NA C2=0.000
Domain overlap (PFAM):
C1:
PF0106717=Calpain_III=PD(0.1=0.0),PF0016825=C2=PU(22.5=42.9)
A:
NA
C2:
PF0016825=C2=FE(56.2=100)
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Other assemblies
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
No suggested primer sequences
R:
No suggested primer sequences
Band lengths:
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]