GgaINT0111555 @ galGal4
Intron Retention
Gene
ENSGALG00000016138 | DSCAM
Description
Down syndrome cell adhesion molecule [Source:HGNC Symbol;Acc:HGNC:3039]
Coordinates
chr1:107694658-107701106:-
Coord C1 exon
chr1:107700978-107701106
Coord A exon
chr1:107694826-107700977
Coord C2 exon
chr1:107694658-107694825
Length
6152 bp
Sequences
Splice sites
5' ss Seq
CAGGTAAGA
5' ss Score
10.77
3' ss Seq
TTTATTCTCTTATTGAATAGACT
3' ss Score
6.35
Exon sequences
Seq C1 exon
AACCCCCTGACCCTCCTGAGATAGAAATCCGAGAGGTGAGAGCACGCAGCATTGCCCTCAGATGGACCATGGGATTTGATGGAAACAGCCCTATCACCGGCTATGATATTGAATGCAAGAACAAGTCAG
Seq A exon
GTAAGAAATAATCTTCCTCTGAAGTAATCCCTGTCACTTTCTTCATCATTGCATTTGTGTTGTAAAAGATAATCCATAAATTGAAAATGCCCGATGGGAAATTTTACAGTGGTTTGTTTAGTCTTTCTCAGTCAAATTTATCATCATTTGTTGTCTTTTTTTGAAGTAACAACATTATGTGTTACAACTGCTGCTTTTTCCATTTCCTTGAGGAAGAGACAAGAGAGGCAAATTTTGTTACTAAAAAAAGACATACTAAGTGATAGTTGGTAATGATGATTTTACTAGCTGATTCTTGTTCCCTATCTTTTCTCCATTTGGATTCTTTAGTTATTATTTTCTGTTTCACTGTATAGAAAAACACCTGCCTTTATAAATCATCTTCTCCTATAGTGCTGACTGTTATTTTCTATCAATATGTGAATACGTGGCATCTTACCTGGAAGGTTAGCAGTGAACATGGGTACTTATGATAACTTCTAGTTGAAAAAAATAGCATGGTTGTTTGCTAAAGCACCATGCTGGGTTTTCAGTAATATGTAAGAAATACTCTGAAGGATAAGAGCAGTGCAAGCATAGACCTTTCTGCTAGGTCACCCAATGTTCATATCAGTGAACATCTGAGAAGATGAGTGAGATTACCATGGAAAAAAATACAACTACTCAATCAGGAAAATATTCCTGTTCGGGTAGATATTTTAAAATCAGCTTTTTCTTCTGCCCAAAGATGTTCATTGTCTGTTGAAATCTAAAAAATATTCAAGCTATGTTGGAAACATGTTTGTGATGTGGAATCAAAGTTAAGCACAATGATAAGCACTGTCCTGGAGTCATGTTTTGAGAAGGGAGATTGCAATGGAAAAACATGTTCATATTCTAAGTATGATTAAAAAGACTCTATTATTTTATATTATAGTATATAGTATATATATATATAGTATATAGTATATAGTATAGTATTATATTATACTGCCTTTTGTTGGAGTTTTTGGCACTATTTTTAAAGGGACATAGGAATGCTGTATGTGAGATTGTAAGTGAAACACTCAGTTTATGTAAACAGCTGTAGCATTTTTATAGTCTTCTATTTTTATTTCTGAGATGTAGAAGTGTTCTTGTTCATAAAATTCTGAAATTTAAAAACTAAAAAATGTATTCTACTAAGCATCTTTACTATCCTTCATTTGTCTCCACTGTGTATTTCCTTTCTGCCTTACTTTGTTAAGTTGAGGTCTTAAATCATCAATTGCCATTTTAGCATGGTTTTCTAAATGAAACTGATAATGTATAGGTGAACATGGTAACTGAGAGGTTACATGTAGAAACTCCCCTCTGAGTCTGTGGATAGAAGTTGCAGCTTTGGAGATATCTAGGCACGGATGCCTTCAAGGAACATGCATGAATGTTCCCAGGCTTTGTTTTCTCTCAGTTTCTTTTCCTTTCTTTCCACCCAAGCCCTTTTCCCAGAGCAATTTTTGAAAGTCATACTTTTTTCCATGTGTATGAAGGTAAATACTTGAGGACATATCCTGAAAAGAGCAGATTATCTCACTACAAACAACAGAAACATTTTTTTACAAAGTCTGGTGCTGAATATTTGGAGAAAATAGGATCAACTTTTGGAATTCTTGCTCACAATTTTTTCATAATTATTAAGAAGATAAAACACTGAAGATGGTTACTTGAAACTTCTCCTGGTTTAAACAATTATATTTGTAATGTGTGATATCAAAAGAAGTATGAGATGTTCAATCTTTGTGGTTCCTCTGACAAAATGTCTTTTGCTAGATGATACTTTCCAGTTCCATGATCTGATGAGAGGCCTTTGTACATCAATCTGACTAACTGACTAATTGGATTGTGCCAAAACCAGGGGAGAACATGAAGAGAGGCATGGCCAAAATAATCAGCATTTTGAAAATTAACATGACAAGCAGTATTTAGCAATTACATTTGAAGGAGATCTACCCAATCATAGCTCACCCTAGGTTGTTGACTTTGTGTGGTATTTTTTTTCACCTTTTTCACCTGCATTGCAATTGTTTAACTGTTATCCATTCTTGGCCAGCTCAAATGCATGCATGATAAACTGAAACCCGATGTGCAAAACCAGGAAGCACTTGCATCAGTAGTCAATGTGTAGCCTAAGTCACAATATGACATGGAGACCACATGGGGCATAGGGGTGACTGGATGATGCAACATAGTCCTTTTCTGTGCTAAACAGCTAGGAAGACCACTTTTCTCTCTTTGAGGAGGAAGAAAAAAAAAAAAGAAGCGAAAAGATTCTGCCACAAAGTCTTACAGATATACCTCAACAGGTACCAAGTCAGTATTAGGATGGTGAGAACTTTATTTGTAACCTTTGGTGTTCCTTGCTCATGCAGCCCAGAAAGCACTCCAGAACAGTGTTCTTAGAGGTTATTTCTGCTTAGCTGTGACAAGGGATGTATCTTAAGTTCTCTATTGTTGCTGGAGAACATTTCTCAGTTGCATGGTGTTTCATTTTTCCAGACTTTCTTCACAAACGAGGTTAGGTATTTTTCTTTTCACTGCTTCTCCCTTCATCATATGGTGTAACTCTGGTATAACTGCTTGACTCCAAAAAGAGGTTTCCAGACATAAGGCCACAGAATCATAGAATGGCTTGGTTTGGAAGGGACTTCAATGGTAATCAAGTTCCAACCCTTCTGACATGGGCAGGGTTGCCAAGTGCTAGATCAAGTACTAAACAAGGCTGCTCAGGGTGATGTACTGCAACTAAAAGTAGATATCTATGCTGAGCCTAATGCTAAATTTTCAATGTGTGTTGTTCACTCTGAGGACTCAGAAATGGGTGTACAACAGGATGCATCTCTAGACTTTTAAAGAAGGAAAATTGCGAAACTTTTCTGTTTCACAGAATGTTTGGGTGACCACATATTGTGCATGGACTTTGCTACATTGTACTAAACTCACATATCCTGTCTACCCCTGACATACTGGCTATGAAGACCAATTAAATACCCTCTGGAAGGAATGTGGAATTGCCCTTTGTATACGTAGATGTGTTTTTATGGTCTAGTTGCAGTGCAGGTGCCATATGAATAGTGGAAATGTAATATTTCAGGCCATTTCAGTACTTAGACGCACTACCTGTCTGCACAGAAGTTTGCCTGTGGCACTTAGATCTGGCCCTTCATTGATACCACTGATGTGTAGCTACCTGATCTTTCCATCTGAATGTACAAATATTTTGAAGATGAGAACTGGTATGTGGGTGTTTCTTTATGCCTGTCTCCTCACTCTTTTTATTTTTGACACCATCATGGAAAATTGATGTGCAGACTGAACATCAGTTCAGTTTAGGACCCAGTTTGGAGACAGAGGGCAGCCGTTTGTGCTTCCCTATGCTCCCTGCTCCCTCAGGATGGTTTTGCAGCCATGTGCAGTGCAATTCTGTGTCACTAGATGGCAGCGAAGGCAAAGACACCTCCTCACCCAGCGTGGGAAGAGGCACTCATTTTCCTGGAATTAGAATTGAAGAGCAAATAGACCTAATAGTCTTCTGAAGAGTGATCCCAAAGCTCCAGCCTTTATTTTAGGAACGGGTGAGGAGCTGCTGGCTTTTCATAAAATCATAAATTTTTCATTAATCATTGTGTCAGTGTGCATTTTATGTAACACTGAGAGGTGCCTGCAAGTGACTTTTAGAGATGGATAAAAATCGCATAAAGAATTCCAGACTTACTTTTAACTTCTGTTGGTTTGCTTGTTTTTGTTAGCCTGTTGCAATTTGCTTTCTATGCATTTTCAATCTTTTAATTAAGTAGATTTTAAAGCAATTGAAAGAAAGAAAAAAAAAAAAAACACAACAACAGACAACTAGTAGTCAATTCTAATACCTCGTGGAACACCTGAAAGCAAGAAAGTATTTTTAGGCTTTGCCAAAGAAAAAATAAGCTAACAATTTTTCTTCTAAACTCCCCCCCCTCCCCAGAACTGAAAACAGCGTTGGAGAGAAATTGATTAATTTTTCCACAGACTGACTCAGTTGGGAGTGATTGCTTTTCTTGATTTGTTTTTCCCTTTCAAAAAGAGGATGCATGCATCAAAATGTAGTCTTGAAATCCATGTCTTAGTCATAAATAAACACTGGGAGCCTACATTTAGCAGTACAGAAGAAGACTGAGTTTTAGTCCCTTTTTTCCATGCTGTGCCATTACTTAATCTGCAAAAAATCACAAGAATTTTCATATCTGTGTCTCTGATTTCAAGAGCTTACATGTACTACAGAAGTTTACCACTCAGGCATCAGTATTTCAAATAACCAGCAGAAAACATGAGCAATTTATTAATATATGGACAATGTTAAAAGAAAGTATCATGCAAGTGAAGGGAAACTTAAGCACTTTTGTTTTGGAGAATTTGTTATTTCTTCTTTTTCTTCTCAATTCCTTTCCTGTTGACATGGTACTCTGAAACAGATAGTCTTCATCTGCGTTCGTGGAACTTCAGACATAACTGTTGGTCAAGATTTCCAAGGGATACTGAAATAACCAATGTCGCTACCACTGTGTAGTTCAGCACAGATTTCCCCTTCAAAACAGCTTCAAAGCTGCCTAGATTTTTGTCATGAGCTGTTGCAGACCCCTGGTTGCCATGCTAGCCAGGCCTAGGATTCTCCTGGTAGCTGAGGACAGCGCCTGGGTGTCACCATACCACACTCTAGATCAACCTCATCACCTCTCCTGTTTTCTAGGATCTACAAAGATAAACTGTTCATTAGCCATATCTGTAGAAAGCCTCTCATTTCTAGCTAATACTTAACCAAATAGTGTCTGAAATCTTCTCATTATGTGGATCTTGCATTCTCCTGTGAAGTATTTGGTTTGAGGAGCTTCAGGTGTGAGCAGCTGGTCACTGTGGTGCTTGGTAAGCCACATATTTTAGGTGAGAGTATCAGGCATTATGAATGCAAGACATTGACAACACTTGATTATTAGCGTATTCAGGAAATTCTGTGAAGTTTAAGATAACAATCTGAAAGAAAGTTTTAGCAGTGTTCCCTGAAAGTAACTCCTTTACAGCTTCAGAAGGTATCCTACAGAGGAAGTTTTGGAAACCTCAGTTACCATGTAAAAGTAAATTCAAGTGTATTTGATTAGCATTTAAATGTCTAATTCCTAAATGTTTTCTGGGTAAATTAAACCACATACAAGCAAAAAACAAACAAACAAGCAAAAAACACCAACCAATAACCCTGTAACCAGTGAAGCTGCAGATGTCATTGTGACAATTTCTATGAGCAAGCTACAGCTAAAGAATTTACACAGCATGTACAAGTATTCTGTATCTGAGTGAGCTTTCTATTTTTAAACTAGTCTTATCTGCTGAGCTTCCCATGATCTTGCCTACAGTGACCCATACTGTAAAACACTGCTGCAGAGCCCCCAGCAACATCCCCCCCCTAGGATGTGGCAGAGGTTAAAGGAAAAACATTGGCTGCAGTAAGAAAAAAAAAAAAAAAAAGAGATGGATGGCTACTCATAAGAGATATGAAGATGTTTTAAAAAGATTCTGTTATTCTGTTTACAGAAACAACATGAACATATGAAATGGAGGGGTAACTGTGTTTAGCCAATTTCCATCCTTTTTCCTGTTATGTCTGGAGAACTTATCAAAAAGTGTACCAAGCAGATGAGTAGTAGCAATAAATATTAACAATATGCTCCTTCTTTTACAGATACATACAAACAAAGAAGAAGGTTTTTAATCCCCCTTGTGTTAAAGTGTTCCTGTGTTCTAACAAGTCAGGGAAATAGCATCAGTTCTGGAGGGTGCTGAGCTCCATGTCTAGTGCTGCTCTCACCATCTCTCAAAATAAATGAACAAACAAACAAATGAAAAGGAAGCAGAGCAGCTATTCTCTCATTCTTTGCTGGTGCTCCCTGGGCTGAAATCCCATTCTTCACAGCGTCTCACTGGTAGGACTTGGAAGAGCTGCGAAGAAATGTGATCGCTTGGTTTTTGTTTGTAGCACTGGGAATTTTCTGGGTTAATTCATCAGGGGCAATATCCTGCTCTATGAGATAGCTTAACTGCAGAATTGTGTTGATAACATTAATGTCATGTTTTATTTGTCTGTTTTGTTTTATTCTCTTATTGAATAG
Seq C2 exon
ACTCTTGGGATTCTGTTCAGAGAACCAAAGATGTTTCTCCTCAGCTAAACCAAGCTACTATCATTGATCTCCATCCTTCCTCAACTTACAACATCCGCATGTATGCCAAGAATCGCATTGGCAAGAGTGAGGCCAGCAACGAGCTCACCATCACGACGGATGAAGCAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSGALG00000016138:ENSGALT00000025993:14
Average complexity
IR
Mappability confidence:
NA
Protein Impact
ORF disruption upon sequence inclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.318 A=NA C2=0.439
Domain overlap (PFAM):
C1:
PF0004116=fn3=PU(47.1=93.2)
A:
NA
C2:
PF0004116=fn3=PD(51.7=78.9)
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Other assemblies
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
No suggested primer sequences
R:
No suggested primer sequences
Band lengths:
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]