RnoINT0051312 @ rn6
Intron Retention
Gene
ENSRNOG00000027992 | Dscam
Description
DS cell adhesion molecule [Source:RGD Symbol;Acc:619992]
Coordinates
chr11:37123494-37129741:-
Coord C1 exon
chr11:37129613-37129741
Coord A exon
chr11:37123662-37129612
Coord C2 exon
chr11:37123494-37123661
Length
5951 bp
Sequences
Splice sites
5' ss Seq
CAGGTAAGC
5' ss Score
9.88
3' ss Seq
TGAAAAACAAAACCCAAAAGACT
3' ss Score
-4.73
Exon sequences
Seq C1 exon
AACCCCCAGACCCCCCCGAGATTGAGATCAAAGATGTCAAAGCCCGCACAATCACGCTCAGGTGGACCATGGGGTTTGATGGCAACAGCCCCATCACAGGCTACGACATTGAGTGCAAAAATAAATCAG
Seq A exon
GTAAGCCTTTCACTCCCCCTCTGCTTTACCTCCACCTCATTCACCCTCCTGCCTTCCTTTGTTTCTTCATTGTGTGTCCACAGCCCCTCCTTCACATATTCTCGGATCTCAGGATGTCATTTCCATCTGATCCATCCCTTGCATGAGTGTGGTGTCCAGGCTTCCTTCTATGCCCAGGTTTACCCTTTCTTAGTAACCTGACTGGACCCCAGTCTTGCCTCACTGGTCTTCGTAGGAATCCCTACCACCTCAGGCATGCCCATGGGTACCAACATAGATAGGCTTCCGCTACACCCCTTCCCAGCCAACGGCCTCCTTTCCTGTCCACTCCTTCAGACAGGTGACTGCCTTAGAGTCCAAGGCTGGGTCTCCCATCCAGAGCCCCAGCTCCAGCAATGCTAGTGTCTGCCAGAAGTGACATATAGCAAGTGTATGCAAAATGAGGACAACTAATCCCCCTGCATGTGACATTGCCTCTATGACAGGCTCTGTCGTAGCGGGGCTAACGCTAGAGCTAGGTCTCAGAGCACTCAGTCAGTCCACAGCCGACACATGTAAAGTTGACCCAGATACCTGCACCATGACAGGCATTCTCTCTCTTCTTTTTCCAAGGCCACTAAAGCCCCCTTGGGGTTTTATAGTCTCCCTGGATTAGAGGGGAACACACTGCAGCCTCTAATCAGAATCATACTGTCTTATAGAAGATAAGAAGCAGGGAACTGCCTGCATGGGAAGGGTTAATATGATTCTCAGAGGCACAGCAATGCCTTTCCTGAAGCCCATGCTCCGCTTCAGATTGCCCTGTCGGAACTGATTTGGTCTCTTTTGAGCTGAGCTGTAGCAACAAATCAAACTCAAGACAGCTAGGAAAAAAGCAGTTGCAGAGGGCGAGATGTCTCACTAGCAGCATGCCATGATAGAATCAGGATTAACTGGAATGAGGAATTAGGAAAAGCAGAATTTGGAGACTCACAGCAGAAAGAAAAAAAAAAGACTCACAGCAGGTGTCAAGCGTAGACCAATGGATACAGATCAGGTGTAGGATAGCCTGTTTGGGGCACACATAAGAACATGGGGGTAGTCCAGCTAGCTGCCCTTATAGTTGCAGATTGGAGTGCTGCATGCATGAAACGGCCAAACAAGACAGCGACTTGCCAGGTGGCAGTGACCAGAGCCAGCAGAGATGTAGGCAGGCATGGAGTCATTCAGCAGGATCCAGGTAGCAGGGAGGGCCCCTCCTTCCCAGGGGCTGGTCACCTGTTGCCTGTATTCCTGAGTCTGGGACATACCACAACCTCCCACTGAGGGACAGACCAGGTGTCTGCTACCTTCAGAAAGGGTCCCCCTGCCAACTGTTGGTACCCACCCAAAACAACATCAGGGAGCATTAGGATCTGGCTCATGTTGGCCCTCTGCTGGCCTGAGCTTCACCTTGCTATTTCTCTATCTGTCTCCCTTCTGCTAACTTCATCTGTTAAAGAGAAGACCATAGCAGAAACCAGGGTTGCCTCTGGCAGGAAGACTTAACTCCCCTGGGCCATGGAGCCTCTACTCCTCCTCAATGCTCCCTTATCATGGCTTTCCCTGGAACATATCACCTCATGCTCATCTCTGTGTGTATTAAATGCCATAGCCATCCGTGCATGTCACTCCACTAGCCTGGAAGCTGGTCGGGCTCCCCCTGCCTACTAGGTCTATTCCCACACTGCCCATTGTTCTGATACCTGATGGGCAGTGGATGTTAAGCTGATATTTAATGAATCTTTAAGACAAAAGTACACCTAAAATGATTCACTCATTGCCTGACACACAGCCCACTGCTGACTAGGGCACCCTTTTGTGCTGCTTAAACATGCATGAAAATGGTTACAAGATCCAGGTCCCCAAAGGCTTGTCTTGATGGGAACATCACCATCTAAGAAACCTCACTGCATACCCCTCCTCAAGTGTCATGGAAATTTCTCAGAGTCAGGCTCTGGATTTCTTCTTTCTTCGAGTCCCCAGCACTTGGTACATTGCTCAGTGCACATAGAGTGTGGAAGAAACATTCCTTGTGTTTAAACTTCAGCCTTAGAGTAGAAAGTCCTGGAAGCAGACAGGGGGAAGCTGCTCTCTTTGTAGGTAGAGGCTGAACTCAGTTCTGTAATCCACATGGCTGTCAGCATCCTCATACGTTATGTCTTTCCTCAGTAACTTCTGAGTGTGCAAATCTCATTGCCATAATCTAAGCTAAATTCATAGGAAACCTATCCTTCAGAATGCACCTCTTCCAAGAAGCCTTCCCTGACCATCCATCTCCCTTCTCTATCCATAATCCTCTAACTCTCACTGGACTCCTAACTAGTTAATCTCTACTGTCCACTGAGCATCTGTCCCCTTGGGGTGCCCTTGTGACATGTCTCTGACCAGTCCTTCACAGTGTCTCTCTGCACTCCAGGATTCCTGGTACACATGCTAGACTCATGGTAAATGTTCACAGAACCATGGCTCCATCCTTTGGAGCAGTGCTATCATCTTGCAAAGGAACTTTCATCTATGTTTCATATGTTTTCTACAAAAGCTACATCCCACCAGTGTAGGAAAAACCCTTCATATTCTTAGCAAAGAGCTTTCTTGCCAGTGTATTAGTCAAGGCTGGATCAAGTCCAGGAAACATGAACTTATCAAATCTGCCGTTCACCCACACAGGGCTTCTTCAACCCATCCTCCATCTCTTAGCCAAATGATCCTCCTTCCATCACTTGAAGACAGATGAGTGTCCTTGGTTTTCTGTTTACCAAAATAATAGTGATTTTAAAGAGTCCATATCCACATCTGCCTCTGTGACCACCAGTCTGGAAACACCCAGAACAAAACCATGATATCAAATGGTAGGAAGTAAGCATAGGAGGGTAGGTGTCTCCCCACTCTATGCATCTTCTCTATTGCCAGGAGCTCCCTGGTGTGCTGACTGTCCCTTTCTTTTGGTTCTTGGGGAAACTATGTCTCTACATGGACACTCTGGTCTCTGTAACAGTCTCCCAACTTCTGCTCATGTGGTGCCTCCCCACTCACTGGACTGTGGTTATTACATCTGATCCCATCTCTCCTTTTTGGGTGCTGAAGCCCTTTTCTCTCCTAGGCCTGTTCCCCTGGCCTCTTTCCTCTCCTTCCACCTCCCAGAGTATGGGGAACTTCAGCACCTTGGTCAGCACCTAGCAACCCTGTTTGGCATCAGCTCCATGAGCTTAAATAATAGAGCTTGCTACAGCCTGGCCCAAGAAATGTCACCATCTAAGAAACCTCATTGCGCACCTCTCCTCAAGTGTTTTGGAAGTTTACCACAGGTAGATAGTTGCTGTCTCCAAGTCTCCTCCTTCTGAAGCTTCATCCCAGATAGTTCTTCTGAGACTATCATCACAGAGAGATGTTTTTCAGTGTCCCAGTGCCAATGTCTTCACCCTAGTCTTCCTTTCATCTGTCTCCCCATTTTAAAGCCTTTTACAATTCCTCCATCTCCAGGGGTTTCAGATACTCATACTCATTATGATCATTGACCTTTAGCCGTATCTCTTTAAGCTACTTCCACTGTTATAATATTGTCCCTAGACCCTCACACTGAAAGTCAAATCCTTGGTTTATCTGGGTATCCTGTTCAACCAAATGAGACAGTTGTTCTAAACTATTAGAATGGCTCAGATGGTGAAGTGTTTTACTACAAAGACCCATGGGCACAGAAACCCTGGGACTGAGATCAACAAGCTTGAAAGCACAGAAACCATCAGACCTTGGGGTCCCAGTGTTCCCACAGACTCAGTAATCACTGGAACAAAGACCTGTGTTTATTTATCAGGTGCCCAACCCAGAGCCCTGAAAGAAGAGTGGAATTACAATTCAAAATGCAAATATAGCTAGGAAGATTGTAGCATAGTCCAGATCGAAATCCTTGGAGCACACAGACTGCAAAGTGTAGCTGCAAACCTAAGTGCGGAGGTACAAACCTGAGCAGGGAGTGTTTGGGGGCAGCTACATGAGCAACCAATAGAATTTATGTGGAAACATCTTACTCTTCTCCTGGCTCACTGTCTGGAGAGATACTTTTTCCAATAGGTAAAGCATGAATTCTGAATAGGGTGGGGAGCTAGTCTTTGAGTCATACTAGAAGGTTGTTTTGCAGATAGTTACCTATAGGGACTTAGACTGGGTCAAAGGAACCTATAGCTAGTGGCTGCTGAGTCCTCGGTATTATATACAATCATTCCCTCCTTGCCTTGGTGTCTCATGTGGCTTAGGAGGTTGGGAGGAGAAGGAGGAGAAGAGGGGAGGAGGAGGGGGAGGAAAGAGGAGAAAGAAGAAGAGGAAGAACAAGAGGAGGGAGGAGGGAGGGGAGGGAGGAGAAGGGAGGAGGAGGAAGAAGATGAAAAAGAAGAGGCATTCATTTGCCTCCCCAGATTCTCAGCCTCTTCCACAGCCCATACACATGGCTGCAGTGAACGTGGTTGTTTCCATTGGTCCTTGCACTTCCAGAAACTTTCATCTTATCTCAATAGAGCATTCAGCCAGCCTAGTGTCTGCTTCCTCCCACGTGTCTTTGTGTCTTGCAATGCTGGCGGTTCCTTCCTGCATCAAAGCATCTTCAGGAGGTCCAGCTTTCCCTCTGACAGGCTTCTCATCGGACATCATTTCACTGAAATAAAAGTTCCCCTCATTCATCCTCTATCCAATCTCACAATTCAGTATTTAGCCACATTCTCTTCCTGTCACAGTGCCTACCTCAGTCTTCCCAACTCAAAAGGTGCCTCTACTTTGCACATTGATAGTGACGATCTGTTTGTGCTATGCATGGTGATTCCCCAAGAAGCAAGAGCCTTACAAGTCTGAAATCATGTGTTTCTATTTCTTCAAATCTTGATTTACCCCAGCACAAGGCAGCTCCCTTATGCTCATCACTAGTGTGACAAAGGTGTTGGCATTCCCAGGATGCCGGTGTCCCTGGGCTCTCCCTTTGGAGACTTACCTACTTATCAAGCACTTACTGTGTTCTTCCTCCTGCCAGGCACTGGGTGAGCACTGGTCATGCATATTGGATGGGTAATGTGGCCTCCACCCTTGTAGAAAATTTCTACAAAAATCCTCAAGTGTATTGTGAGTCACAAGAGAGGACCTCTCCACTCATGGTCCCAGGGTGTCTTTTCTCCTACAACCACCACTTGCTAATGACTATCTGACCTCAGTCAACTGTTCAACCCTTCTAGATCTTGGATGACTTCCTCATCTTTAACCAAAGACCTAATATTCCATGATATCTCTTCCCAATAGGCAGGCATTGGCATTCAAAGTAGCTGAGGTTTAAAAAAGAATTCCTGCCACAGAAGATTTGGGATAAAATGAGTTTTAAGAATTGAGGTTGACCAAGGTGCTTGCTTTGTCAGATTTGCACCAAGGTTGAATGGGCTTGTGTGGAATGATCTTAGTCTTATCACACTTGATTTGGGAAGGAAAGGTCAGATATGACTAAGAGTTTTGCTGGGTTTGTGTCTTTTAGAACTAGGGGCCCACAGAGGAGCAATGTCTGAAATATATTCTACTGTGCACTGTAGAATGGGCTCTTGTGTATGTCTGAGGCTTCTGCAGAACCAGCTTCCACCTCTGTGTCTCCTATCCTGCTCTTCCCCAGACATATATTCTGTGTTTGCTCAAGGTTCTTCCCTGTACCAAGCTCACCTCAGCTCTTTACCCACTGTCATGGGAAATAAGTGTGTGACCCCATGTCCCCTCTGATGACCAGCTCAGACAAGAAGCTGGAAACATTGTATTGAGATTTTGCTTTGGGGGTATTTTTTTCTTTCTTCCTTTCTTTTCTTTGTTTTTATTTTTATTATTTTTATTTTATTCCTGTTGTGAACTTTCAAAGGCAGAGGAAAAAAACTCACATCTCTATCTCTTCTTTTTTGAAAAACAAAACCCAAAAG
Seq C2 exon
ACTCCTGGGATTCTGCTCAAAGAACCAAAGATGTTTCCCCTCAGCTGAACTCGGCCACCATCATTGATATCCACCCTTCCTCCACCTACAGCATCCGCATGTACGCCAAGAACCGGATTGGCAAGAGTGAGCCCAGCAACGAGATCACCATCACGGCAGATGAGGCAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSRNOG00000027992:ENSRNOT00000002215:14
Average complexity
IR
Mappability confidence:
NA
Protein Impact
ORF disruption upon sequence inclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.364 A=NA C2=0.593
Domain overlap (PFAM):
C1:
PF0004116=fn3=PU(47.1=93.2)
A:
NA
C2:
PF0004116=fn3=PD(51.7=78.9)
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
No suggested primer sequences
R:
No suggested primer sequences
Band lengths:
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]