GgaINT0111571 @ galGal3
Intron Retention
Gene
ENSGALG00000016138 | DSCAM
Description
NA
Coordinates
chr1:111708929-111712923:-
Coord C1 exon
chr1:111712774-111712923
Coord A exon
chr1:111709127-111712773
Coord C2 exon
chr1:111708929-111709126
Length
3647 bp
Sequences
Splice sites
5' ss Seq
CAAGTAAGC
5' ss Score
7.47
3' ss Seq
CTCTCTGTTACCTATTGCAGATC
3' ss Score
10.83
Exon sequences
Seq C1 exon
ATGACAGATCCACGGTTCTACTAACTGATGCTGACTTTGGAGAGACGTCTAAGCAAAAGTCACTGACTGTCACCCACACTGTACATTACCAGTCTGTGTCGCAAGCTACAGGACCGCTGGTGGATGTCTCTGATGCCCGGCCAGGAACAA
Seq A exon
GTAAGCATTTAAGAGAATATGCTATCTGGGGAGTAGAAAGTGGTAAGAAAATGAATGCGATGCTCCTGCATCCTTACGGGGTTTTCTCTGAAAGCTGAGAGAAATCTATTTAGATCAGCACAGAACATTTCTTGTACAACTGAATTTAGTGATTTAATATGGTAAAAATTGTGTATGTATCTGAAATGTAGGTATAATTTGAAATAGTTCATACTTGACTTTAATAAAACCAAATGCATGGTGGATTTTAATTTCTAGAATGGATTGAGTAAATTAGCTTAATGGCTTTTAGTGCCTTATATATTTTTTTTAGTGAACAATCTATATTGTATTTCAAAATAAGTCCTCTTTCCTTACCTCTCCATCAGGGAAGAAATTAATTTCTCATTATTGCTTTTCTGAAAAAGTCATATTTCCAGTTTTAGTTATTACGGTAAATTATTTTTTCCCAGATATCTTCATGCTGAGTTATTCTTATAGTGATTAAAAGCTATAATAAATTAATACACTTCTTCAATCCCTCCGTCTTAATTTCTTTCATGAATGTATTCCATATCTATGCAAATGGAAAAGAAATTGACCAGATGGAATATATATAAACTATGATCATTACAGCAATACAGTTCACTAGCAGCATGCAATCTGTGAAATCTCTGGGATTATTTTCATCCCCAGACAGTTTCAGAATTTGTTTACTTGGTGAGTGTGGTGAACATAAATGCTGAAAATTCATTTGTGCATCACTTAAAATGAAGATTATTTAAGAAATCTTCATTTAGTCTTCATTACCACACCAGTCTTTATAAATGACAGCTTCTGTAGTTCTGACCTTGCTGATTTTCTAACTCTGTTAGTTTTAAGTTATGGTTCATTATTTCTTGAAAATTCGATTAGTACCATCATGTAGAATTCTTTTTTTGTCTATGGAGAGTCGTGACATTTGCATTAGGAAACTCAAGGTACCCTTATTTTTCTTCTGGAACCAATCTTTTCTCCCTGCTTTGGTCCATGTACACTCTGGCAAGCCTACCTGGTAAAAGCAAAAAAAAAAATCATCTGGATTTCTGTCACATGGATACATCAAATTTCAACGAGCAACCAATTTGCAGTCCATCCTTTTTCCTGCCTTTTCTAATTAGGAAAAACATACCACCCCAAAATTACCTGCCTGTCCCATGGCACAGCAGTCTATAGCACTGGCTTCTGCCATTCCTCATCTCTTCATATGCAGTTATGTGCTTCAGTCCACTGGATACAGGGAGAAACTTCCTTCAAATTGAACTGGAGCTTAACTCGTAAGTAGGATCACGATCTGTCTTCAGCCCAGCTTTGGAAAGAGAAATTCATCCACACTTTTGTTATTCGTAAAGACCTGACTGTAGCAGAGTTGGGTTGAAGACTTTTCTGTAGCCTTCTCTGGACTTAAGACAATAATGTAACTTTGTGAGAAACTAGTACAGTATTTGTAAAGCTGCTTGTGCAGGACACATGGCTCAGGTTGCAAACATACCTGTCCAAGCACACTCAGACCCAGCGGTTGCCAAATTTTCCCTTACAGCTATTTCCAAGTTGTTGTGTAGCTCTTTTATATTTATGAACCTTTTTGTCTCATGAACCTTTTTGTTGCTCACCTCAGCATTCTGCACTTTTATTTCAGCATGTGACAGCAGTGGTATTTTAACAGCTGGGGCACCAGATGCGTTCTGTTTTCCATCACACGGGCAGTGGAGCTTGCTGAGTCCTGGCCACAAAGTCCCTTCTGCAGGCACGCTGCTTGGCACATGCTCAGCAGGACCAGCACTGACCTCCTGTGTGCCAGCAGCAGGCTCTTCCACCCTCCTCCAAGTTGTGGCTGAAGGCCTAGTGAGTCAGAGCATCAGAGAATGGTTGGGGTTGGATGGGGCTTCTGGCCCAACCCTGTCCCCAGCAGGGACACCCAGAGCAGGGTGCCCAGGACTATGTGCAGGCAGCTTCTGAAGATCTCTAAGCAGGAAATTTCACAGTTTCTGGTCAGACAGTGCCAGTGCTCGGGCACTCTCACAGCGCAGAAGTGCTTCCCAATGGTCAGACGGAGCCTCTTTTGCTCCAGTTTGATCCCACTGCCCATTGTCTTGGTGTTGGACACTACTGGAAAGAGCCTGACTTTGTTTTCTCTATTCTCCCCGCCAAGCCTTCTCTGCCCCAAATCAAACAGTCCCAGCACCATACCCTGTGCTTTCCCACCAGCACACTCCTGTCCTTTGTGACTTCCCTCAGAGCAGGTGCATCTGCTTGCTTCTGGCCATGCAGCAGCCAAATGCCAGCTTTCCACAGCTACTATTACCGATGTTTCATACTGACAGACTACACTGGGCGTGTTGTGCCAAGTGTGCTTTTGGATGCTATCCATGTGAAGCTGTTATGTGCTGCAGAACCAGCAGGATCAATTATCAATGTTGCTAAGTTCATATTTTTCCACTGCTGTTGGGGGGGAAGATGTGAAATGTGAGAAAGAACAAACCTCTTTACATATTCTTACTGGGAATCCTTAGGCAGAAGAAATGCTCAGAGTCATTATCTGGGTCTTGTTGGTTTTATTTTTTTTTTAAATTGCTTCTGCTAAAGTCTGTTACCTCGAAGACTGACAAGTGCACCATTTGAATGTCAAAGAACATTTGCATAGATTTGAATTTTCCATTTCTAATACCCTTTCTCTCTATTGTTAGTAATATCATTTCAAAAGCTGCTAGGAGAATTTTTTTTTCAGTGCTGATTTAGTCACTTTCTTTTTGCCTAATAACGTTTTTTCTATTCCGCTTGCTTTCTTAGGTACCAGCCTCATTTTTACGGAAGAATTATTTGTTAACAAAGTCATAGAGGTCGATTTTGGTAGATAATTCATTTTCACTCTGTTGGTCACCAGATTTTCTCTTGGGCAATAGAAAAATAAAATAAAATATTGCTGAGCTTAGATAAGTAGCAACAGATTTTTTAAAGATAAGACATTTTACTTACTTACATTTTTAAAAATGGTCAAATCTTTATGAGCCTGCCACTACTGAAACTCTGAGGGTTCTGATATAGGCTATGTCTTAAGTCCTGACTACTTGGAAAAAAAAAATATCTGGGATCTGTAGCTGATCAGTACCATATTAAAGTATTAGTGAAATGGCTGGAATAGGAGAAACTATGCCACCACATTTCTGAGCACGTGTTGTTACAAACAGAGCAGTTGCCTGGTGCAGAAGGCTTCTGAGGACTCATCTATGCTAATTTACCTGGGAATTCACTTGAGATGTGGTGTGAAATCCCTGACCAGGTCTATTTACTATGTGCTCTTCCACTTCTTAGTAGTTTTGGTGCCGGAGAACTACTTGTGTTGGAGTAATGACCATGGCAGTGGGAGTCTGGTAGGCTTCTCCCTTTTTAAAATGCATGCTTCCATTAGAAAGAGGGCGTAAAAAAAAAAAAAAAAAAAAAAAAAGTGCTAGCTCCTTAATAATGAACAATTTTTTCAAATTGAATGAATTGAATTAATGAATTAATTCATTTTTCTCCAAAGAATGTTACATATCCCTTATGAACAGACGTGAGCGGCCAGTCCCTTCTGAGAGGGATTGTTTCCTTGTCTATTCAATAGCAAAGACCCTCTCTGTTACCTATTGCAG
Seq C2 exon
ATCCTACCACAAGGAGGAGTGCCAAAACCGGACCCACAGCTCGCAACCGCTATGCTAGTCAGTGGACCCTCAACAGACCTCACCCCACCATATCAGCTCATACCCTCACCACAGACTGGAGGCTGCCCACTCCCAGGCCAGCAGGATCTGTGGACAAGGAAAGCGATAGCTACAGTGTCAGCCCCTCACAGGACACAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSGALG00000016138:ENSGALT00000025993:29
Average complexity
IR
Mappability confidence:
NA
Protein Impact
ORF disruption upon sequence inclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.647 A=NA C2=0.985
Domain overlap (PFAM):
C1:
NO
A:
NA
C2:
NO
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Other assemblies
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
No suggested primer sequences
R:
No suggested primer sequences
Band lengths:
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]