MmuINT0053367 @ mm9
Intron Retention
Gene
ENSMUSG00000050272 | Dscam
Description
Down syndrome cell adhesion molecule [Source:MGI Symbol;Acc:MGI:1196281]
Coordinates
chr16:96831899-96841256:-
Coord C1 exon
chr16:96841107-96841256
Coord A exon
chr16:96832097-96841106
Coord C2 exon
chr16:96831899-96832096
Length
9010 bp
Sequences
Splice sites
5' ss Seq
CGAGTGAGT
5' ss Score
8.49
3' ss Seq
ATACCCCTTATTTGTTGCAGATC
3' ss Score
8.99
Exon sequences
Seq C1 exon
ATGACCGCTCCACAGTCCTGTTGACGGATGCTGACTTCGGGGAGGCAGCCAAACAGAAGTCACTGACAGTGACTCACACGGTGCATTACCAATCGGTGTCTCAGGCCACCGGGCCCCTCGTGGATGTCTCCGATGCTCGGCCAGGAACGA
Seq A exon
GTGAGTGTTCAGCAGCCCTTGGAATGTATGGCTGTTGTCAATGCTAACAATATCCGTGCCCCTCGAAAATAAAAGGTTGGGCTTTCTCAATCACACACCAATGCAATAGATGTGATGAACTTTCAGTTGGGATGTTGAAGCATCCTTTATTACTTGTTAGGTGTGTGTCAACTCAAACCAACACACCTTAGTCTTGGGTTACTGTAGAAATTGCTAGAAATTTCAGGTGAAGATAACCCTTTGAACTTTATACAACATGGGAAAGAGAAGGGTGATTAACTTGAATGTGTTGTGCAGTATTGCATTTGGGGGAGAGAAACAATCTCAACATGTGTTATCTACAGCAACCTTTCAATTAAAAAGTAGATGTCAGAGTCTTTGTTTCAGGCATTGGAAGATAGAGTTTCAGACCAATAGTCCAAGGTTGTGCACATGAAGTGCACACAGAAAGCTGCTGTAAACATGTCTGACCTCAAAGCTAGCATTCGTCTCCTAAACACACAGAGAAGAGTGGTGCTTCTGGCAGCTAAATCTAGAGATATTGTTCTGCTTAGTATTCATATTTGCATTGGTAATTGGTGGAAACTGATTACTGCAAAGAAGTTTCCTAATGTACATCTAGCTTATTAATTAGTCTTGTTTATTCATAATTGAAACTATTCATAAATCCCCTCAAAGGGTGAGAAATTAATGTCCCAATTGTCACTTTGGAAGCTTTGCCATCTCGCTTGTAAGTCTCTAATCACTCTCTCTGTAAAATACCACACTTTTAGAGACATATAATATCATGAAGAAACCCATGATGCATTGCTGGAAGCTGTGGCTTACGAATTCTAGCTTATGTCATGCAGTGAGCTTCATGGTATGACTGATCAGTTCCCAAACCAGGTTGTAACACTCAGGATAGCATTGAACAGAGCTAAGGACCACCTGAGACTGTGGCTTTCAACATGTTGAAGCCATGTTTGGTTTGTCCCTTGTGCAAAACTTGTCTCCTTCCTTCTGAGGATGTCAATATGTTCTGGAGACACAAATAGTAGGAACCACTAGTTCTCTGAGCTTGTGTCTACAAGCTAAGAGCCTTGTTACTAAAATGCTTCAAGGCCTTGACCACTCTTTGACTTTATCACTGTGAGCTGAGATCTGGCTCCAGCCTCTTCAGATTTCTAGGCTACATTTTTTTTTTCTCTTAAATCAAAAGACAGTTGACACATCTGGGAGATATGTCATTGCCTGCCTTGATCACAGCACATTGGTTCCATCTGTCAGGTAAAAAGCAACACAGAATGATGCTTTCCTTTGAATAGCCTTTGAGAGCAAAGGCACCATGCACAGTAGCTATCACAAATAGTTAATGCAGGAGCAGAAGCAATGACAGGAATGTACCAGAAACTTCCAGCAGCATGAAGAATATGCCATGGAATAATGGGGAGTGGTTTTGACGGCATTTAAAATATCAGAAATGAATTTGTACCACGTGCAGACACTGTAAACCAGGGACTCTAGCATGAGGCAGGGAGGAGTGTGCTCCATGCCTCATGGCTATGAAGTTGTTATGCATCACTGGGGAAATAGAATTCCTCCATTCAGCATTTAGAAATGTTTATTCAGGTTTCACTTTGCATATATGGCTCGTACTCAGTGTTGGGAATGCACTGCAAACAAAATGAGGAAAGACTGTATTTTTCATTTTAGTGGGAAGGCAGATATTACACACGGAGTATGGTTTCTTTCTCTGGAAATGATAGATAAAGAAAAGACAGAGTGAAGAGGCACAGAGCCAGGTCAATCAAGTACAGGGTACAGGGACGGTGCGAGGAGCCCCCTAGACCTGGGTTTTTTGGGAACTCTTTCATGGAGGAGGAGGTGGTACAAACCAAGGTCAGAGGGGAACCAAGGTCATCAGAGGGAGAGCTGGAGCTGGCTGTCAGGAGAGAGCAGGGAGGGAAAAACCCCAAGACTCTCCGGAGCACTGGAGTAGACACAGCCCTGGGGTGCTGGCGAGCTGCCGTGAAAGCAGTTAAGAGAGCAAGAGACAGAAACAGCTGTCCAAGCCATGCCATGTACGTGGGGTCCATCCTGATAGTCCTACCACGTTGTCCCAGGATCCAACCTGGCTGTCACCTGGAAACACTACAACTTGGGAGCATGCTTCTCTCCTTCACAGTGAATTTCATTAAACCACGCTGACAGACAGCAAAGCGATTCAAGCTTGGGCACTGCTCTCCAGGTCTCTCCTCCCACCCTAAGATGGAATTATTCAGAGTCATCCTGAAAACACTCTCTTGAGGATGTCTGCAATCTTTTAATTATCCCATTAACTATATTCTCAAGCCTAAACACGGTAGAGAACAGTAATATGCAAGTGTGTGCGTGCGCGCGTTTGTGTGTGTGTGTGTTATGTTTGTTTTTAATGAAGACACTGAGTGACTTAGCCCCACAGCACCTTCAAAGCTTGACCTTCAGGAATGTCCTGGAGCGCAGATCCTTGCTCGCTCTTGCTCCCTGGAGCTTGCCACCACCTCTAACTAGCTGTCACATCTATATTAACACACTCCTGTGGTCCGATGGCCTAAGCCCAGCTCATTAGAGCTTGTTATGTTTGCAGAGATACATTTGTGAAGCCAGCTCTATAGCCAAGAGTTCTGCCTCTGTGGGTGCAGCTGCACGCACATCAGAACTCCTCATAAAGATTCCACCTGTACCGAGCAGGGCTGAGGCTCCCTGATCACAGTTCCCTCAGACATGCCGTATAACAGAGTTCTATAGCATTTGCATTAAATTAGGTACTATTAGGAATCTGTTGTTTGAAGTGTGTGGGAGGACACACACAAGTTCTATGCAAACACCGTGTCATTGTGTCAAAGAGTCTTGAGCATCTGCAGGCTTTGGTACCCAAGGAAGTTCTGGGATCCAGTCCCAGTGAATGCCAACGTTTCTATGATCCAACTATATTCCCCATGGTCTCAACTACAAAAGGCATCATTTTTGCATCCTCTATGTTAGGATCATGTTGCTATTGCAGGAGTCTTTATTTATTACTAGAACATTGGAAGCTGCTGTCTGTATACAAACACGACTGCAACTCCAGAGTTTGTGTTCCCAAGTATTTTATTAGCTTGCCAGAGAGTTGCGCCAAATTCTTCTCTTGTGTGTGAGGAATGGAAACAATGTGCCATTCACTGCTCTCAGTATGTGAAGACACACACTTTAGCCATATCTTTTGCTCAGTTTCCTTCCTTCCTCTGTATGAATGACACTGATGTCTGTATGAATGACATTGAATCCCTTGAACCTGGGACTCTGTTCACACCCTGCTCCCAGCATATGACTTAGGCATGCACCCTGTAAAGATCAAGTGCTGATCAATTTCAGGGTGCTGGGATCAGAGTGATTGGGATAAGAGTAAATGGGTATTTAACTTACTCATGTAGGACTTGGAAACTCAATTCATTACCCCCTTTCTCATCCATCTCCAGAGATTTCTATAGGTTCAGCAGGTCTGTATGCCCTAACCTCCCAGAGAAAGTGCATTCTTTCCTCCCTTCTGATGGAAAGATGCCCACCCACAAGATCTTCTCCTGGGAAAAGTAGCAAGGTCTGCGAGTGTGATGACCTATGATTGATTTTTTTTAAGGGATTGGATATCATATATACCTGAAAGTTACTAATTCATCCATCCATTGATTGCTCACCCGTGTACAGAACATTTACCATGCATCCATTAAATACCATCTCTCCTTGATATCTATGGGTTCCTGAACCTCCAAGTTATGGCTGCCAAAGTACCTTGTATACAATGGCTCTCTTAGTTCACTTTCTATTGCTGTGATAAACATCACAATCCACATCAACTTGGGGAGGAAAAGAGTTATTCCTCCGGCTTACACACCCCAGGTTATAGTCCATCACTGAGGGAAATCAGGGCAGGAACTCAAACATAACAGGAACCTGGAGGCAGCAGTTGTTGCAGAGGACATGGAGGGATGCTGCTAACTGGGCTTGCTCGCTACAACTTACTTAGCCTGCTTTCATATACAACCCAGAACCACCTGCCCAGGGGCAGCGCTAACCACAATGGGCTGGGCCCTGGCACATCCGTCAAGAAAATGCCCCACAAACTTATCTACAAGTCAGTCTGATAGAGTCATTTTCCCAGTTGAGGTTCCTTCTTCCAAGGCAACTCTAGCTTGTGCTGTGCTAAGATCACAAACAGTTAACGAATACAGTGGTCCAGTGTTTCTACATAAGGTGTAGTCACCTTCACATATACTCTAAATAATGTACAGATTCCTTATAATGCCTTGCACACTATATGTACACTGTGTGCACACTGTGCACTGCCATATGTACACCCTGTGTACACTGTATGCACACTATATGTATACTGTATTACACTGTATGTAAAGTGTATACCATTTATGAATAGCTGCTATCTCATCACAGTTAGAGAATGATGACAAGACGTCACTACATGTTCTAGATGGACACATTTTGTTTTCTAGATACTTGTGGTCAATGGTTGGCCGAGTCCTTGGTTAGAGAACTGCCGGATATTGAGGGTCAAATAGTTAGCAAGTACTGCTACTGGCATCTGGTCCTCTCGCCACCCAGTGACACAGATTGTCAAGTTCACATGGAATTCAATCCTCAAACAGACGAGGGAGTCAAGGTCCCGAGGGGGAGGTGACTTGCTCAGTTCCCTCAACCTGATAGCAGAACGAACACCCCTAAGTCCCAGACAGCCACACGGCCTGCTAAGAATCTGTAAGCCCAGGAATCGTAGACCATGGGGCTCTGAGAAGAGCCCCCCTCACATGCCTTTCCCTCACATTAATATCTAGAAAGGCTGGTGCCATTTCTGCACTGAGGCTTTATAACTGTGAGAGCTACTGGAGCTAAGGTCTGCCCACAGGTCCTGGCTCCCTGCAAGATGTGAACATGGATCATAGATATACTTACTTCCCAGATGCCAAATCCCCAGCCCACAAGCTGCAATCTCCCAATGCAGAGGAACCCAGGGAAGGTAGCTGAGCCTCGGCCAGGAAAACTCAGGCCCTTACCATGCCCATCTCCTGCCCAGCCCTGCACCATTTCTGACTAGAGCAAATTCACAGCCCTCTACTATGCCACAGCAAGTGACTTGGTCATGTGGCTCTCAGCCTGGCCCTTGCCTGCCCATCCCTGGCCATCTTCACCCATCTGAGAAGTCTGGATTATGAATTGTCAAGGGGCATTCTTCTGTCAAACTGCATAAACCAAGATTTTAGCTCTCTCAATTAATCCATTGACTCTTCCCAATACACCTGGGATGTTTCCAGCAGGTTGAGGGTCTGCTGCTCAGGCACCATAGACTTTTATACCCTGGATTCTCTGACACATTCAGATCACCCAAAGCTAGAAGTGGCAGTGATGTCAGCAGTCTCAGAAATGAGGTACACAGGCCTACCCAAATGAGATCACAAAGCCAGAGTTACATAGCCTTTGAGTAATGAAACTAGACTTGAAAACCAGGTAACATGATTCGAAAGCCATACACTTCGCCACTTTGTGTGACCACTGAGAATAGATGTTACTACATAAAGGACATGTGGGAACTAAAGCAGGCTTATACAACACACAGGTCAATATACATGAATGTGTGTACAAATACATATATCATATACATATCATGAGTTCTCATATCTACTCCTTTTTTGTCCGTAGATTCAACTCCCCCATACACCACACCCTAACAATACAATATAATAACTGATTTCCTAGCATTTACATTATACTGACTTTTAATTCACATAGAAATGATTTTTAAAAAACACATAGGAAGATGTGAGTAGGTTATATCCAAATAATGATAAAAAGCTTAAAACATACATTGAATCCTTATTACTACAACCCTGAATATATACTCTGTCACCCAGAATGGTACGAGAGTGTGCAGGAAGAAAATAGCTCCTGTGGGCAGGGTGATCCCATGATCCAATGCACCATAAACCCTGGATAAACGTTTGCTACTTAAGTAGGGAAATGATTGACTGTTATGCATGGGAAGGCCACTGAGGTCTCCGTGCATAGCTGAGGCCTCATCTCTGAGACCTGAGGACGGATAGCAGATGATTAAAGGAAGACTAATCCAGTGAGCATACAACACATGACATGCTTTGTAACCAACCTGTTACCCACACAATCCTCTCTGATCCTGAATTTGGGATAATTAAAATAATTTGATTCAATGGGCAGAAAACTTAATGCAGAATTAGACCCAGAGTTGAAAGGTCAGGAGTTATTTATACCCCTGTCCTCTAACTCATTGGCTGCTTGGCAAGCATGCTGCTTAATCACTAAGTTGTATTTATATTAGAGGCTTGGGAGGTTGGCAAAGAATCTTCCATGCAGGGGCAGAAAAATCCCTAGATAAGCAAAGTTACCATCGAGCAAAATCCAAGTATTTATATCGCTGTTGGAAGCGACCACATCAAGTTCAATTCAGATACAAAATAAGGGTTGCTAAAACCTGGTTATTTTTTTTTTTTTTTAAAGTGTGTCAGATATCCTTGCCTTCCCACATCCTGACACGATTCTAACCCTGGGACACCTGCGTAGCACAGAGCAGAACTGTGGCCTGCGGCTCAGAAAACTGGTACCATGACCTATATTTTCAACATTTATCAGGCCACTGCTAGCTCTGTCCTCATCCAGGGGGACTTGGGATAATGAATAGAATTAACTTGAAAAGAGTTGCAGCTCTGAATAGAAATTTTCCAAATAGGGAGGTCTCGGTGGGGAAGGAAGACCTGAACTCCACACTGAGAAACGAGCTTTCTAAGGCACGGAACCCGGGTGAGAAACTTGGAGACTTGAGAAGAGAGTTAGGGACTTTGAGTCTGCCCTAGCCCGGGCATCTATTCCGAGAGAGCACCCAAAATCCTCAACAAGTGTGGCTGCAATTTGAAACCCAAGGAATAAAAAATGAGATTCCTCAAAACTTACATAAGGGGCTGGGTAATTTTCTAGAAAAGACTCATTAGCATTTAAATAACAAGCTGTACTATTTAAGCTCCACTTATCAAGTCAATAGTGCCTGGAAGACATTTAGACTCCTACCCATGACACTGTTTTTCTCTCTGTGGAGGACCTCTCTGGAATGTTCCTCTTCCCTGGGAAAACTCGCAATTATCATTCACACCTTGTTGTGCACAGGGCTCCAACACTTTGGCATAGCTCGTTTGCATTCACATCAAAGACAGAAACTATCTTCTAATAAGGCCGCCTTCTATGGAATTTTTGCAAGAGATGAAATGTGCCCTTAAAAAAAAAAATCAATGTAGCCAAAAGCATGCAGCAGCACTGGGTCTTTTGATGACCCAGAGAATCTTAAAAATATTGATTTGGCCATCTTCTTTATGTTCCTCTCCTAAATCCTAGAATGATAGATTAGTTCAAAGACCAATAACTAGAAATCTGCAAAGGGGAAAATCTTCCACTTGCAAAGAAAGGCTTTTCCCTGATGCCCCGTGTCAGCATTTCATGTTCCAGTGGCAATTATGGACAAGCCACGGTCCTGTGCACACCCAACTACAGACCCAGACAGCCAGGATCAGGCCACATCTGGTCAAGTAAGACACAGTGCCTGAGCAGACGGGCAGAAGAGCTGTGTCATGCCTAAACTGCCATTGTTCATCCGTGAAGCGACTCCAGGCTAAGTACCAATCCCAACAATTACTGTGAGCCAGCCGTATAGACAGCTCTAAAGACAGACCCTTGCATCTACTCTGAAGAGACATCCGAGTTCACAGAAGTATGCAATTGGGCATAAGCAGCCATATCCAAAGTTGGGTCTCAGTTTGTTCCTTTGAAATAGCTGCACCAGTGCTGATCACAAAGTGGCCAGACTATGCCATTCTAAAAAGCAGAAAATTCAGAAGTAGAAAAGTCCCTTCCAGGACCCTGAACTACTTTCATTTGGAGTCCCAGAAAAATCACTCTAAGGAACAGAACACCTCCCCTGGTCCATGGAATTTCAGGAAAGGTAATACTCTGGCCTGCTCCAGGGCCCAACACACGTTGCTACTAATATGTCCCTTTTCTTAGTTCACCAGTGTTGAGCTAAGACCACACTACCCTATTCACCTGTTGACCTGAGTTCCAGACTTAAAGAAGATACAAGGCTCTGGCAGTAGCCCACATACACGTAGACCTTGACATTTTTCATAGACAGTTGACACATGCTATCCAGATATCATTTAGCTATTTGTTGTTCATATTAAATAGTCCATCCAAGTCTTCATCAAAGTTCCCATGATACTCATCAAGAGACATACTGTCACATGCTGAGAGGATGTTGGGACAGAAAAAAAAATGTGTTATTTTTGTCTCCAGGGGCTTCAGCTTAAATAACTGGATGGAAAGTACTGACTGAACTTAGAAGTAAACTTGAAACAAGGCTTCAACAGCCTTTGGCCATCCTGTACTCAGACACAATTCTTGGTTCTCCCTGCAGGGGGCAACCTCCTCCTGTATCTCTCTCTTCATAAGTCCAACAGTCTTATAGCATAGGGACCCACCCTATCCCCCCTGTGACCTCCTCATGACTGATTATGTATGCAATGACTGTTTTTTTTTCCAAATGAGATCATGTTCTATGATCCTGGAGTCAAGATGAGGGATATAACATGAGGTGGAGTGGGGAGCAGCGAGTAGATCAGTCTGCACCAGGGTAAATGAACCTCAGAAAGGAAATCTTGTTCAAACACATTTGGTCAAGTTTCCTTGTCTTATGGGAGGTATTGATATTTAAAAAGTTTGAATGGATGTTTTGGCCATTGTTAATGGCCACAAACAATGTTCTGATCTGAAGCTTCCAAACACAAACGGGGTATTCTTATGCTTATGGGATTTTTTAAAAATACTTAACTATCTGGCAAACTTAGTAAGTAGGTCATGAGGGAGATGACAGCTGCTTGCTCTGCTTGACCCCTGAAGACAGATACACAATACCCCTTATTTGTTGCAG
Seq C2 exon
ATCCCACCACCAGGAGGAATGCAAAGGCTGGACCCACAGCGAGAAACCGGTACGCCAGCCAGTGGACGCTCAACAGACCCCATCCTACCATCTCTGCACACACCCTCACCACAGACTGGAGACTGCCTACACCCAGGGCTACAGGATCCGTGGACAAGGAGAGCGACAGCTACAGCGTCAGCCCATCACAAGACACAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSMUSG00000050272-Dscam:NM_031174:30
Average complexity
IR-S
Mappability confidence:
NA
Protein Impact
ORF disruption upon sequence inclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.549 A=NA C2=0.985
Domain overlap (PFAM):
C1:
NO
A:
NA
C2:
NO
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Associated events
Other assemblies
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
No suggested primer sequences
R:
No suggested primer sequences
Band lengths:
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Pre-implantation embryo development
- Muscular differentiation time course
- Spermatogenesis cell types
- Reprogramming of fibroblasts to iPSCs
- Hematopoietic precursors and cell types
Other AS DBs: