GgaINT0112113 @ galGal4
Intron Retention
Gene
ENSGALG00000014720 | CD163L1
Description
CD163 molecule-like 1 [Source:HGNC Symbol;Acc:HGNC:30375]
Coordinates
chr1:77272467-77276224:-
Coord C1 exon
chr1:77275918-77276224
Coord A exon
chr1:77272776-77275917
Coord C2 exon
chr1:77272467-77272775
Length
3142 bp
Sequences
Splice sites
5' ss Seq
CAGGTAAGG
5' ss Score
11.08
3' ss Seq
CCTTCCTCCCTACCACCTAGGTT
3' ss Score
8.94
Exon sequences
Seq C1 exon
GAATTGAAGCTGGTAAATGGAACTGGCCCCTGCTCTGGGAGAGTGGAAGTAAAACATAAGGATCAGTGGGGAACTGTGTGTGATGGTGACTGGAACACAGAAGATGCTGAGGTTGTTTGCAAGCAAGTAGGATGTGGATCTGCTGTTCAGGCCCTTAACCGAGCTCCTTTTGGAGAAGGATCTGGACCTACGTGGTTGTATCGAGTAGAGTGCCGTGGTAATGAATCTGCTCTCTGGAACTGCCCACATACAGGCTGGGGTGGCTTTACCTGCCCTCATTATTTTGATGTTGGAGTGATCTGCTCAG
Seq A exon
GTAAGGAGTTATATAACATTTAATAATGGAGGAAATCCCACAGTGCAAAGAAGCTGATATCAACCTTTGTCCTAAATGGATAAAGCCTAGTAAGGTGGTCAGCACAGAGGTAACACTTTTTCCATGGCCTCTGAACCGAAACAAGTCACACCACCATTAAGACTTCTGCTGACCACAAGTGTATGTCTGCTTTACCTCTGCACAGCAATGATACAGAACAGAAATAGACACAGTAAATTACACAGAACAGAAATAGAAGCATTATTTCTTTCTGCCACGCCTCTTACAGCCAACATGAGAGCAATAATCAACTTGCTCCTGGCCAGGAAAGGCAGCTAAAGAGAGGTTGTAGATGGAGAAGCAAGAAAATTCTGTATTATGCCCTCCAACCATTCTCTTTCTTTAGATCTTCCTGTAAGCTAGGACGGGAATTTCTGGAATGGCAAAGGAATCCAGTGACTGCTCGGTGTCTTCACTTGCAGTATGTGTTTGGTTTTGCTCCTTGGAGCACTGCAAGAGGTTCTTCTTTCCTCTTTTTTAGGACTTCATGTTTGTCCTTTTTGATTTTCATAAAGTTCCTGTCAACCCATTACTTCATCCTATGTACATCAGAATGGTAGCTCTGCCCTTGAGATTACCTCAGTTCAGTAAAAGTGCTCTCTATTGAGTTCTCTAAAATGCTGGTGAAGACATAGAATGGAACAGATCTCAGGGAAGACCACAGTGGTAATCCACTTGTTGCCAACCTCCAGGTTGAGTGCAACTCATTAAGAACTACAATCTGACCGTGACCAATGAGCTTTCTGCTCATCTAGTCATTCACTTATTGAGACTGTTACAAGACACAAGAGTTGTGCAAGACAATTTCAAAGACCTTGTTAAATTTGAGGTAAACGGTATATACTGCTATTATCCCATCATCCACGATTCAGTCCTTTTTTCAGAGAAAGCAATCAGGTCCTATAGGCATGGTTTACTCTTGGAAAAATCCATGCTCGCACTCCTTGTTTACCTTCTTCACCTACTTAGAAATAAGTTCCTGGAAAACTCACCCCATGACTTTCTCTGACCAGCCTATAGTTCTCCTGGTTGTCTTTTCATCCTTTTCTGAAGAGTACGACATCTGCCTTTTTCCTGTTGCTAGGGACATAATCTCTACAACCTTTTGAAAATGGCCTCTCTTCTAAAAAGAATGGACTTGAAAGAACATTGGCCAGTTTAGATATACCACATTGCATCCCATGGGTTTATTTAGGTCAAATTCTCTCTCCTGAACTCTGCTCTGCACTTTTTCTTCTTTCTCACTCCATTTAGTATCTGGAAATCCACTATTTCAGGGTGACTAAAGGCTACCAAAGATTTCCATAACCCTAGCCAGTTCTTCCTTGCTACTGAATAGATGTCATGTTCACATTTCTTAAATACATGCAAGGATGAGGGCTACACCATTTCCCTGGGCAGCCCATTCCTATGCTTCTCCACACTCTCTGTGAAGAAATTCTTCCTAATCTTCAGCCTAAACTTCCCCTGGTGCATCTTGAGCTCATTCCTTTGTGTCATATCGCTAGTCATATGATAAAAGAAACTTCTTTTAGTTGTAGAGAGCAATGAGGTCTCCCCTCAGCTTCTTTTTCTCCAGACTAAACAATCCTAGTTCCCTTAGTTACTCCTCCTATATCTTCCATTCCCTTCACCAGCTTCATTGCTCTTTGTACATGCTTGTGCAAACCAATATCCTTCTTGAAGTAAGGGACTGAAAACTAAACACAATATGTGAAGTGCAGTTTTGCCAGTGACAATGTGAAGATGTGTGATTTGGAGATTTTCTTGTCTATAGAAGATTTTGTCCAATTCCTCACCTTACTGGGTGGTCTGTAACAAACTCGCACCACAAGATCAGCCTTACTAGACTCTCCTTTGATTCAAAGCCACAAACTCTCCCAGGCTCTGTGGAGTCACTCTTGATAAACTCAAGATTTCCCTTGACAGTACCATTGGTACTCATGTGAATAACATTTTCTATGCTCCTGCACAGCTATAAATTAATTGTGGTGATTGTCTGCACTGCACAAAAACAAATCCATTACCATTTCCATATCACGTCCACTGAGAAGAAAAGCATATAAAATAAATATCTTGCCAAAGAACAGTGGTGGGACTGACATGATATGAAATACTTCACTGCTAATAGAGCTGTGGAGCTGAAAAAAATACAAACACCAAAGAAAAAAATACTGTTTTATGCTGATTGATAAAACTTCAAGAATTCATTGAGTGAATTAAAAAACAACAGCAACAACAAAAAAACAGGTGAGATATAGCCACTGAGCTCGCTAAATGTAGCCCCATCTGAGTGGAAGCAAGTCACTACTACAAGCTCCAGATGACAGAAGAAAAGCAGTGCAATGCTGTTTTGAGGACAGGTTGTTTCTCTCACAAACTGCTGTACCTCAGCTGCCACGTTCCATCAAAACTGAGGTGGGCTTCATTCAAGGTCTACACAGCTCTCTCTCACGTAGCATGCCTTGCCTGAACAAGATCTCCAGAAATATAGAGCTCATGAAGTGGTGTGCAGAGGCATTCAACAAAGCCTATGGGAATCGGCAGCACTGAACTTGAACTAATAAACCTGCAGACTTCCAGTTCATGCTATAGAGGCCTTTTGTAGTTGATTCTGCTTTATATTCTTCTGGAAATCCCTTGACACTTATATAATACAGGTTTTTCTTCTTTTTGAGGTACTTCAGTCTCCTATTCCTTTACATAGTGAAGACTTGAGAACATACCTTGTAAATACTTATGTATTTATTTATTTGTTTGTCAATTGCTACTGTTCAAACATGTTGCAAATGTTCAAAATTCCCCTTATTCTAGGGCTTCCCAAGCACTTGTTCAAGATCTAGTATTTTCATGTACTAAAAACACAAACATTCCTGCAAACTGTTTTTTTTCCCTCTCATTTTTCTCTTGCCAGCAACATACAGATATTGCCACAACAGCTATTCAAAAGCCAGTAGTCCTCAGAGATGTGTGTACCATGTGTCTTGTCCATGAGTGCATGAGAGAAATTAAATTAGACCAGTGTAATCAACACTCAATACTGATTTTCTTATTTCCCTCTCCCTTCCTCCCTACCACCTAG
Seq C2 exon
GTTTCTCAGGGCTGCATCTGTCTGGAGGGGACACTGCCTGCTCAGGACACCTGAAAATAAAGCAAGATGAAACTTGGACTACAGTATGTTACTCATACATTGATTTTAATGCTGCTTCTGTTATATGCAATGAGCAAAGGTGTGGCCAGGCTGTGGATGTCTTGAGAGGAGCTCACTTTGGAGACAGACATGAATTGATCTGGCAAGAAGTGTTCCACTGTGTGGGGAATGAGACTCACCTTGCACACTGTCCCAGGACGTTGCAGCATAGTAAGGCATGCTCTCATGATGCTTATGTTCTATGTTCAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSGALG00000014720:ENSGALT00000023738:1
Average complexity
IR
Mappability confidence:
NA
Protein Impact
ORF disruption upon sequence inclusion (1st CDS intron)
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=NA C2=0.000
Domain overlap (PFAM):
C1:
PF0053013=SRCR=WD(100=95.1)
A:
NA
C2:
PF0053013=SRCR=WD(100=92.3)
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Other assemblies
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
No suggested primer sequences
R:
No suggested primer sequences
Band lengths:
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]