RnoINT0031939 @ rn6
Intron Retention
Gene
ENSRNOG00000010253 | Cd163
Description
CD163 molecule [Source:RGD Symbol;Acc:1310382]
Coordinates
chr4:156759884-156764068:+
Coord C1 exon
chr4:156759884-156760210
Coord A exon
chr4:156760211-156763753
Coord C2 exon
chr4:156763754-156764068
Length
3543 bp
Sequences
Splice sites
5' ss Seq
CAGGTGATA
5' ss Score
4.58
3' ss Seq
AATACTATTGTTTTTTTTAGGCC
3' ss Score
9.08
Exon sequences
Seq C1 exon
ATGGAGCAGATCTGGAACTTCGACTCGTCGGTGGAGGCAGTCGCTGTGCTGGGATGGTGGAGGTGGAGATTCAGAAGCTGACTGGGAAGGTGTGCAGCCGAGGCTGGACACTGACAGATGCCGACGTGGTTTGCAGACAGCTTGGATGTGGCTCTGCACTTCAAACACAGTCTAAGATCTACTCTAAAACCAAAACTGAGGCAACAAATACGTGGCTCTTTCCTGGCTCTTGCAGTGGAAATGAAACTTCTCTTTGGCAATGTAAAAACTGGCAGTGGGGCGGCCTTTCCTGTGATCATTTCGAAGAAGCCCAAGTTACTTGCTCAG
Seq A exon
GTGATACTTTCAATCCATTCGTTAAGAAGCAACTTAGTTCCAAGGGTTCTGTAGATACTGTGGCCGTGGTTTGCTTTTTCTGCTCTTGTTTTAACCTTATAAATCAGGATATTCGGGCGCATTGTTTATGCTAATGATAGAATTAGGATTTTTTTTAACCTCTTCCTTTGAATTTTTTAAAGATTTATTTATTTAGTATATATACATATGCCTATATGTATGCCTGCACGCCATAAGAGGACACTAGAGCTCATTATAAGTGGTTGTGAACCCCCATGTGGTTGCTAAGAATTGAACTCAGGACCTCCAGAAAGTGCAGCCAGTGCTCTTAACCATGGAGTCATCTCTCCATCCCCTGGGGTTGGTTTTTAAAATAAATCTGATTGCACTATTTCTGTGAAAGCAGTAATTAATGTATGTGACGCATATCATTGTGCATCTGTATTATGCATATGTGACATACTGACAGACCAATGAATAATTATTCTTCAAATAACAACGTATTGGGGGTCTGGAGAGATGGCCCAATGGGTAAAGCACTTACCACACACTCCGAAAAGCCTGAGTTCAGACCGACAGCACCCATAAAGATCTGGATGCCCCAGTGTTCACTTGTAAGCTTAGCACTTGCATCTGACTACAGCTATTCTCAAAGTTAGCAAAAGAATGTTATCCAGCTACGAGGTCAAAGAGCAAATTTACAGATGCCAATACGTACAGATGTCAACCTCTGCCTGGCATTGTTCATCTCAGACATAAGGCCATTTGAAACCTAAGGCTAAGGGAAAGCCGAGACCAGAAGATTATTTTGCTGGCAAGCTTGACGCTTCGGTTGTGCAGCACCAATTTTATCTTCTGCTTTGGCTGCATTTTACCATCAACTCAGCCGAGAAGCAAGACACTCAGGGTGTTTCAAATGATGACGATTTATTCTTCTTTGTGCATCTCATATACTTTGTTACTGGACAAAAGGAGAAAGTCCTAACTAATTGTTCTTAAATTTCCTCTTCATTCAAGTTCTTAGGGAAAGAAAAAAATGTTGATTTAGTAACTTTGGCAGATTAAAACTTAACTTGTTAATTGAAAGAATTGATCTATGCACAAAATACTATTTAATGGCTCTTACACAAAAATCAATGAAGTCATATATTTGTTGGGAAGAAAGTCCCTTTAAAAAGCTCAGAGTCCATCATTCTGATATACATAGTGATCTAAAGGCATGAGTCAATGCGTGTTAACAGGATCACAAAATTAAAGCTGAAAAAAGGAAGGGCCAAAGTAACCTATTTGGATGGAAGATTTTGGATTTAGATTCAGATGTTTTAGCATTGGGGAACAGAAAGAATGTGTACAGAAAGTTTGCTTTCAAGCACATTACATGCTTTCACACAGGAAAAAAAAAGAGCACATTGGGTTTGGTTTTGCTAGTCTCTGATTCTATTTAATTTCATTTGAAATAGCTACACACGAACACTCTAGAAACCAAGGAACATAGTTTGGCCTGATCTCAGAAATTGCCTTGACTTAAAAATTAAGTCCAATGCCAACCCCACTCACAAAACTTTCAACCCAAAATGTGTCCTACCTGCAAGAAGTGGAGGGACAAAGACGGAGCGGAGGCTGAGGGAATGGCCAACCAATGACTGCCCCAAAATTGAGACCCATCCAACGGGCAAGAACCGATCCCTGACACTGTTAATGACACTATGTTATACTGGCAGACAATAGCAGAGCATAACTGTCCTCTGAGAGGCTCCACCTGAAACAGATGCAGAGACCCACAGCTAAACACTGGACAAGACATTGGGGAGTCTTGTGGAAGAGTTGGGGAAATGATTAAGGGACCCAAAATGAATAGGGACTTCACAGGAAGACCAACAGAGTCAACAAATCTGGTCCCTTGGAGGATCCCTGAGATTGAACCACTAACCAAAGAGCATATAGAGGCTGGACCTAGAGCCCACACACATACATAGCAGATATACAATTTGGTCTGCATGTGGCTCTCCAAACAACTGGAATGGAGTCTGTTCCTGACTCTGTTGCCTGCCTGTGGATCATGTTCTCCTAACTAAGTTGCCTTGTCAGGCCTCAGTGGGAGAGAAGGTGCCTTGTCTTGCAGTGACTTGATGTGCCAGAGTGGGTTGGTACCCAGGGGAATGTTCCCCCTTGTCAAAGGAGAAAGAGAAGAGGGGGAGAGGAGGGGCTATGGGGGGCTAGGAGGAAAGAGGGACTGCAATTGGGATATAAAGTGAATTGATTGATTAATTAATTAACTAACTAATTAATTAATGTATACGTAATAGCCAGTGACATCTTAGGCGTATTTTATGTTCACCCAATTCAAGTTAAGGACTTTCCAGTTCAACAATCACTGATTCTTTGTGTATAGAATTGTTTGCTCTCAGCTTGGTCTGCATTTAGAAATCATGGGTCCTTCATCTCATATTTGGATAGGAATTCACTTTAATGAGCAAAATTCCATCAAGCTGAGACATTATATTTGTATTTCTAATGCAGAAAGTAGTCATGTCTGGAACATTTTCAGAGTTACCTCGTGTAAGGTAAAAAGACACATGATCTGAAATATACACAGAGAGTACGAACACTGCAAGGGCTGAAGGGCTGAAGGGCTGTCCATCTGTACCTCAATGAAGGTAGCGTCAGAGGTTTGCACAGGCATCTGTGAAGGATGCTTGCTCTTTAGAAGGTCCAACTTCAGATGAACTTCTGCTTTTTTCTGAAAGAAGTAAATTTGAAGTGGTTCGCATTTTCAAGACACTCGCTGGTTTCTGGTGTTCAAGGAAGCCCTGCTTTCCTTGATGGTTAAGCCCTTTGGCCTGAGAAGGAGCACAACCCAATCTGAGTTCCATTTCTTGTTACCTGGCATCTCTTTCGTCTACATTTTAAAGACCAGCTACACTAAGTGACATACAGGTTTGTTTTCTCTCTCAGTCTAGGAGGCACAAGATCTAGTATCCTGTTGCAGCTCTGCCCTTCCTGCTGGCAGAGCAGATGGGGCACAGAACATGGTGTGGACAGGCAAGGCAGAGGATGCATAGGCCTGTTTGTCTATGAACCACTCTTTTAAAGCCCTGTCAGGAAGGAACAGGACAGGAAAGTCACAGATATCAAGGGTCGCACTTTTTAAAGTCTGGTGTCCATTCAATGTTCCAAACAAAACTATGTTGAAAACCTATATGCAGATGTTGATAAAACCGTCGTAGACTTCAGACTAAAGCAAGTGCTGGATTGGATGACAGAGCCCAAACTGTGAACAAACTGTGCTTCATGAATAAATGCAAGTGAAATACTAGAAGAAAAGAGAAGTTCTGATCTTGCTTTTCTTCAAAATTCAAAGCTCTAGAATTTTCTTAGGATAGGCCCAATGAATAATTTGAGAGCCACAATTTGCTATACTCAATCTAGACAGAAAATCCAGGAGGTGCAGGGTGAAACTGCAGAGAACCCTGGCTACTAGTCCCAGCAAGCGTGAAAACGTGGAAATTGTACCTCTCACAAAAATACTATTGTTTTTTTTAG
Seq C2 exon
GCCACAGGAAACCCAGACTGGTTGGAGGAGAAATCCCATGTTCCGGTCGTGTGGAAGTGAAACACGGAGACACGTGGGGTTCCGTCTGTGATTTCGACTTGTCTCTGGAAGCTGCCGGCGTGGTGTGCAGGGAATTACAATGTGGAACAGTCGTCTCTATCCTAGGGGGAGCACATTTTGGAGAAGGAAGCGGACAGATCTGGGGTGAAGAATTCCAGTGTAGTGGAGATGAGTCCCATCTTTCTCTGTGCTCGGTGGCGCCCCCACTGGACAGAACTTGTAGCCACAGCAGGGATGTCAGCATAGTCTGCTCAC
VastDB Features
Vast-tools module Information
Secondary ID
ENSRNOG00000010253:ENSRNOT00000068407:6
Average complexity
IR
Mappability confidence:
NA
Protein Impact
ORF disruption upon sequence inclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=NA C2=0.000
Domain overlap (PFAM):
C1:
PF0053013=SRCR=WD(100=90.9)
A:
NA
C2:
PF0053013=SRCR=WD(100=92.5)
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Associated events
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
No suggested primer sequences
R:
No suggested primer sequences
Band lengths:
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]