DreINT0144196 @ danRer10
Intron Retention
Gene
ENSDARG00000096083 | si:dkey-21h14.8
Description
si:dkey-21h14.8 [Source:ZFIN;Acc:ZDB-GENE-110913-34]
Coordinates
chr4:11062044-11063952:-
Coord C1 exon
chr4:11063644-11063952
Coord A exon
chr4:11062344-11063643
Coord C2 exon
chr4:11062044-11062343
Length
1300 bp
Sequences
Splice sites
5' ss Seq
CTGGTAATC
5' ss Score
3.45
3' ss Seq
CTGCTGTCTTTCTGCTCAAGGGT
3' ss Score
7.33
Exon sequences
Seq C1 exon
AAACATTAAGATTAGTGGGTAGTGGCAATACATGTGCTGGTCGAGTGGAGGTTTATCATAGTGGTCAGTGGGGAACAGTGAGTGATGTTGGCTGGGATATGGCTGATGCTACAGTGGTATGTAGAGAACTGGGATGTGGAGAGGCTGTAGGTGCACCTAAGCAGGCCTACTTTGGCCAAGGGCGAGGACAAGTCTGGATTATTAATGTGATCTGTACTGGAGCAGAATCTGCACTAAAGGACTGTCGATCAATTGGTTGGGGAAAACATCAGGCTAATCATGCTGATGATGCTGGGGTTATCTGCTCTG
Seq A exon
GTAATCCCAATTAATATTCTGTTGTTTCTACAGCAAAAATGACAGAACTTTGAACTGTCAAATCATGCAGTTTTTTTAGCTCCTCTGACTTACAGACTGTTATATTGTGTTATTGAATACTACAGAAAGTTTTTTACTATATCTAGTCTCTGAATGAGGCTCATTGGGGAGAAATAAAAATGTCATATATAAATGATTCTTGAAATATTGTCATATTAGTTAATGGTAGCAGCATGTGACCAAACATATGTGAAGATGATGATCTAATAATGTCCTGTTATTTAATTCTTTTTTTAAATGACAGGACAATTTATTGCAATTTGTATCAGCATTTTTGCTTTCGCTATTACTTAATCAAGACAAATTGGCAACGAAATTCTCAAAAGTCAAATAAAAATGGTTACTAATAATTTGCAAAAATAAATTAAAAAAAACAATACTGAACTTAGAATATTAGTAAATGTTATAGCAATACTTTAAAATCAATAGTAAAATAAAGTCATGTTAATAAATATGTCAATATTACTTTTAAAAATACAACTGAGTTTTACTAGTTACTAATTGCATATAATAAAATGAATACAACTTGTAATCGGATTATGACTATCATTTTACCAGGTTAATAGGCATAAACCAAGATTAATGACCTAAGATTAATAAAAGTTTTTTTTTTTAATATAGTTTTCATTGTGAGTTTAGATAAATAAAATGATAACTATTGGAGCCTTATTGCACAGTATTAATGTACAATAGTCCTATAAATAGTCTACTTGAATTTTCAATCAATATTACAGCATGTAAGAGGTCAGATTAACATGTAAAAATGTTCATGTTTGACTATTAAGCTAGCCGAGTCTCCAATCATTTGGCACTGTTATGAACACCACGACAAATAATATCTAAATATTCTTAAGAGACACTCTTAAAAAAATATATAGTAAATATTCTGTTTTTAATAATATACTATATTCAATAATTTGGATTAGCCATGATATCAGTCCATTATTATGATATATCGAATAATTAAATATTTGCATATGTCTACTTATATAATTACAAAAGGTCAGGAAAGTAATTATGCATGTTTTCTCAAGTTTTAAGAGGGTCCGAAGTTGTATACACCCCAAACTGCCTTTAATCAATAATAATATTGCTAAGAGATTTTTTTTTAATTTACCATTGTATTTTAGGAAGGACAGAAGTTTACCAGTAATAATTAATAATGTACTATTGAATGTACTATTTGAATGTTATAAAGTCTACAAGTTATACAAGTGTGTCTGCTGTCTTTCTGCTCAAG
Seq C2 exon
GGTCCAGGCTAGTTGGAGCTTCTCGCTGTTCTGGGCAGTTAGAGATACTACGAGAGAACACATGGCACACAATGTGTGACACTGCCTTTGACCAGCAGGATGCAGAGGTTCTGTGTAGAGAGCTGGACTGTGGGGCTCCTGTACAGGTGCTGAGAGCTGCTGCTTTTAACAAAGGAGACGCTCGGATGTGGACACAAGAGATTCGCTGCAGAGGAAATGAGCCTCATATATCCGTCTGTCCAATATCTTCATTCATAGTCAACTGTACCCATAAAAATGGCATAAGAATGTCATGTTCTG
VastDB Features
Vast-tools module Information
Secondary ID
ENSDARG00000096083:ENSDART00000150760:4
Average complexity
IR
Mappability confidence:
NA
Protein Impact
ORF disruption upon sequence inclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=NA C2=0.000
Domain overlap (PFAM):
C1:
PF0053013=SRCR=WD(100=94.2)
A:
NA
C2:
PF0053013=SRCR=WD(100=96.0)
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Rat
(rn6)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
GGCAATACATGTGCTGGTCGA
R:
GTGTGCCATGTGTTCTCTCGT
Band lengths:
356-1656
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]