GgaINT1001360 @ galGal4
Intron Retention
Description
Uncharacterized protein [Source:UniProtKB/TrEMBL;Acc:H9KZK0]
Coordinates
chrLGE64:652233-653357:-
Coord C1 exon
chrLGE64:653043-653357
Coord A exon
chrLGE64:652548-653042
Coord C2 exon
chrLGE64:652233-652547
Length
495 bp
Sequences
Splice sites
5' ss Seq
CAGGTAGCT
5' ss Score
6.52
3' ss Seq
TCTGCCTCTTTCCATTTCAGACC
3' ss Score
12.05
Exon sequences
Seq C1 exon
ATCCAATGGCAGTCCAGCTGGTGAATGGCCCAAGCCGCTGTGCTGGGAGAGTCGAGGTGCTGGAGCGACACCAATGGGGGACAGTGTGCGATGACAACTGGGACATAAGAGATGCCAACGTTGTGTGCTGGCAGCTAGGCTGTGGTGTGGCCATTGCAGCTCCTGGCTTGGCTCACTTTGGTCGGGGAAGTGGTCCCATCTGGCTGTCTGAAGTCAACTGCACAGGGACAGAAGATAGCCTCTCCAAATGCAGGGCCAGGCCTAAAGGAGTCACTGGGTGTCACCACGGAGAAGATGCCAGTGTGGTGTGCTCAG
Seq A exon
GTAGCTGCTGTTCATAGCTGATGAACTTATGGGTACTAACAATGTAGGAACTCAGTGGATTGGTTTTTCTTTCTCACCTATGACAGTGCTCTTCCCATATGTGGATCTCTGAATCTCTGAGGCAAGATAAAGCATAGAACCATAAAATCATTAAGGTTGGAAAATACCTCTAAGGTCTTCAAGTCCAACCATCCACCTATCACCAACATTGCTCATTAAACAATATCCCTAAGTACCAGATCTACACATTTCTTGAACACTTACATCAGAACAGTTTCCCAGAGTAGCTGTGGATGCTCCATCCTGGAGGAGTACAAGGCCAGACAGGATGTGGCCCCGGGTAGAACGGTCCACTGGGTTGCAACACTTTAAGGTCCCTTCCAACCAAGACTATTCAAAGATTCTATGATTCACTGTCCATGTCATATCAAGTGCTTGGTCTGTGATCACAAGGTCTACAGCCATGAAGTGATACTCTGCCTCTTTCCATTTCAG
Seq C2 exon
ACCCCACCGAGGTCCGGCTGGTGAATGGCTCAAATCACTGCTCTGGGAGAGTTGAAGTGCTGCATAATCAGCGATGGGGAACTGTGTGTGATGATGGCTGGGACTTAAACGATGCAGAAGTTGTGTGCCAGCAACTGGGCTGTGGTACAGCCATATGGGCTCCATCTGCAGCTCGGTTTGGGCAGGGATATGAGCCCATCTGGCTGGATGATGTGAACTGCACAGGATCAGAGGCTGCCCTCTCTGAGTGTAGGGCCAGACCATGGGGAGTGAGTAATTGCAACCACAAAGAAGATGCTGGTGTGGAGTGTATAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSGALG00000009103:ENSGALT00000014816:5
Average complexity
IR
Mappability confidence:
NA
Protein Impact
ORF disruption upon sequence inclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=NA C2=0.000
Domain overlap (PFAM):
C1:
PF0053013=SRCR=WD(100=92.5)
A:
NA
C2:
PF0053013=SRCR=WD(100=92.5)
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
GTGCGATGACAACTGGGACAT
R:
GCATCGTTTAAGTCCCAGCCA
Band lengths:
345-840
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]